BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922950
Length=397
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45145.1 | Symbols: ATTRX5, ATH5, LIV1, TRX5 | thioredoxin H... 617 2e-176
AT5G42980.1 | Symbols: ATTRX3, ATH3, ATTRXH3, TRXH3, TRX3 | thi... 279 1e-74
> AT1G45145.1 | Symbols: ATTRX5, ATH5, LIV1, TRX5 | thioredoxin
H-type 5 | chr1:17074942-17076330 REVERSE LENGTH=753
Length=753
Score = 617 bits (334), Expect = 2e-176
Identities = 376/396 (95%), Gaps = 3/396 (1%)
Strand=Plus/Plus
Query 1 GCTT-AGAAGaaa-aaaaaaCAATGGCCGGAGAAGGAGAAGTGATCGCTTGCCACACCCT 58
|||| |||| ||| || ||| ||||||||| |||||||||||||| |||||||| |||||
Sbjct 54 GCTTAAGAACAAATAATAAA-AATGGCCGGTGAAGGAGAAGTGATTGCTTGCCATACCCT 112
Query 59 CGAAGTTTGGAACGAGAAGGTTAAAGAAGCCAACGAATCCAAGAAACTGATTGTGATAGA 118
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 113 CGAAGTTTGGAACGAGAAGGTCAAAGACGCCAATGAATCCAAGAAACTGATTGTGATAGA 172
Query 119 CTTCACAGCATCATGGTGTCCACCTTGCCGTTTCATTGCCCCCGTATTTGCAGACATGGC 178
||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 173 CTTCACAGCATCATGGTGTCCACCTTGCCGTTTCATTGCACCAGTGTTTGCAGAGATGGC 232
Query 179 TAAGAAGTTCACTAATGTTTTCTTCTTCAAGATCGATGTTGATGAATTGCAAGATGTTGC 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 233 TAAGAAGTTCACTAATGTTGTCTTCTTCAAGATCGATGTTGATGAATTGCAAGCTGTTGC 292
Query 239 TAAGGAATTCAAAGTTGAGGCAATGCCTACTTTTGTTTTCATGAAAGAAGGCAACATCGT 298
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 293 TCAGGAATTCAAAGTTGAGGCAATGCCTACTTTTGTTTTCATGAAAGAAGGCAACATCAT 352
Query 299 TGATCGTGTTGTCGGTGCTGCGAAAGATGAGATCCATGAGAAGCTGATGAAGCATGGTGG 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 353 TGATCGTGTTGTCGGTGCTGCGAAAGATGAGATCAATGAGAAGCTGATGAAGCATGGTGG 412
Query 359 TCTTGTAGCTTCTGCTTGATTGATTTCAGTTTCTAA 394
||||||||||||||||||||||||||||||||||||
Sbjct 413 TCTTGTAGCTTCTGCTTGATTGATTTCAGTTTCTAA 448
> AT5G42980.1 | Symbols: ATTRX3, ATH3, ATTRXH3, TRXH3, TRX3 | thioredoxin
3 | chr5:17242607-17243912 FORWARD LENGTH=716
Length=716
Score = 279 bits (151), Expect = 1e-74
Identities = 265/319 (83%), Gaps = 12/319 (4%)
Strand=Plus/Plus
Query 20 AATGGCCGGAGAAGGAGAAGTGATCGCTTGCCACACCCTCGAAGTTTGGAACGAGAAGGT 79
|||||||| |||||||||||| ||||||||||||||| | |||| ||||| ||||||| |
Sbjct 165 AATGGCCGCAGAAGGAGAAGTTATCGCTTGCCACACCGTTGAAGATTGGACCGAGAAGCT 224
Query 80 TAAAGAAGCCAACGAATCCAAGAAACTGATTGTGATAGACTTCACAGCATCATGGTGTCC 139
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 225 CAAAGCCGCCAACGAATCCAAGAAACTGATTGTGATAGACTTCACTGCAACATGGTGCCC 284
Query 140 ACCTTGCCGTTTCATTGCCCCCGTATTTGCAGACATGGCTAAGAAGTTCAC-TA-ATGTT 197
|||||||||||||||||| ||||| ||||| ||| | || |||||| ||| | | ||
Sbjct 285 ACCTTGCCGTTTCATTGCACCCGTCTTTGCTGACTTAGCCAAGAAG--CACCTCGACGTA 342
Query 198 TTCTTCTTCAAGATCGATGTTGATGAATTGCAAGA-TGTTGCTAAGGAATTCAAAGTTGA 256
||||||||||| |||||||||| |||||| || | ||||||| |||| || |||||| |
Sbjct 343 GTCTTCTTCAAGGTCGATGTTGACGAATTG-AACACTGTTGCTGAGGAGTTTAAAGTTCA 401
Query 257 GGCAATGCCTACTTTTGTTTTCATGAAAGAAGGCA-ACATC--GTTGATCGTGTTGTCGG 313
||||||||| || ||| | |||||||||||||| | | ||| | || | ||| || ||
Sbjct 402 GGCAATGCCAACGTTTATCTTCATGAAAGAAGG-AGAGATCAAGGAGA-C-TGTGGTTGG 458
Query 314 TGCTGCGAAAGATGAGATC 332
|||||| ||||| || |||
Sbjct 459 TGCTGCTAAAGAAGAAATC 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18749870377
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5