BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922994
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
AT1G46768.1 | Symbols: RAP2.1 | related to AP2 1 | chr1:1726570... 739 0.0
AT4G06746.1 | Symbols: RAP2.9, DEAR5 | related to AP2 9 | chr4:... 117 1e-25
> AT1G46768.1 | Symbols: RAP2.1 | related to AP2 1 | chr1:17265701-17266536
REVERSE LENGTH=836
Length=836
Score = 739 bits (400), Expect = 0.0
Identities = 474/511 (93%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 1 CCCAAAAGTTTGTCTTTTATCAATGGAAAGAGAACAAGAAGAGTCTACGATGCGAAAGAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 8 CCCAAAAGTTTGTCTTTTATCAATGGAAAGAGAACAAGAAGAGTCTACGATGAGAAAGAG 67
Query 61 AAGGCAGCCACCTCAAGAAGAAATGGCTAGCCACGTGGCTACAAGGAAGCCGTACAGAGG 120
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 68 AAGGCAGCCACCTCAAGAAGAAGTGCCTAACCACGTGGCTACAAGGAAGCCGTACAGAGG 127
Query 121 GATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 128 GATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGCTC 187
Query 181 ACGTCTTTGGCTCGGCTCATACACAACCGATGTCGCCGCCGCTAGAGCCTACGACGTCGC 240
||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 188 ACGGCTTTGGCTTGGCTCTTACACAACCGATATCGCCGCCGCTAGAGCCTACGACGTGGC 247
Query 241 CGTCTTCTACCTCCGTGGCCCCTCCGCGCGCCTCAACTTCCCCGATCTTCTCTTACAAGA 300
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 248 CGTCTTCTACCTCCGTGGCCCCTCCGCACGTCTCAACTTCCCTGATCTTCTCTTGCAAGA 307
Query 301 GGATGACCACCGATCAGCCGCCACCACCGCGGACATGCCCGCAGCTCTTATTCGGGAAAA 360
|| ||||| | ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 308 AGAGGACCATCTCTCAGCCGCCACCACCGCTGACATGCCCGCAGCTCTTATAAGGGAAAA 367
Query 361 GGCGGCGGAAGTCGGCGCTAGAGTCGACGCTCTCCTTGCTTCCGCTGCTCCTTCGACGGC 420
|||||||| |||||||| |||||||||||||| || ||||| || |||||||||| |||
Sbjct 368 AGCGGCGGAGGTCGGCGCCAGAGTCGACGCTCTTCTAGCTTCTGCCGCTCCTTCGATGGC 427
Query 421 TGACTCCTCTCGGCCGGTAATAAAACCCGATTTGAATCAAATACCCGAATCCGGAGATAT 480
| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 428 TCACTCCACTCCGCCGGTAATAAAACCCGACTTGAATCAAATACCCGAATCCGGAGATAT 487
Query 481 ATAGTCAAATTATACACTTGTAGTTTGTTTT 511
|||||||| ||||| || |||||||||||||
Sbjct 488 ATAGTCAATTTATATACATGTAGTTTGTTTT 518
> AT4G06746.1 | Symbols: RAP2.9, DEAR5 | related to AP2 9 | chr4:4073962-4074545
REVERSE LENGTH=584
Length=584
Score = 117 bits (63), Expect = 1e-25
Identities = 141/179 (79%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 106 GAAGCCG-TACAGAGGGATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTG 164
|||| || |||| ||| ||| ||| |||||||||||||||||||||||||||||| | |
Sbjct 99 GAAG-CGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAG 157
Query 165 AGCCTAACAAACGTTCACGTCTTTGGCTCGGCTCATACACAACCGATGTCGCCGCCGCTA 224
||||||| ||||| ||||| | ||||| || ||||||| ||||| || ||||| || |
Sbjct 158 AGCCTAATAAACGATCACGGATCTGGCTTGGTTCATACAAAACCGCCGTTGCCGCGGC-A 216
Query 225 -GAGCCTACGACGTCGCCGTCTTCTACCTCCGTGGCCCCTCCGCGCGCCTCAACTTCCC 282
| |||||||| ||| || || ||| | ||||| || || ||| | ||||| |||||
Sbjct 217 CGGGCCTACGATACCGCTGTGTTTTACTTACGTGGTCCTTCGGCGAGACTCAATTTCCC 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24413795442
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5