BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923079
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47710.1 | Symbols: | Serine protease inhibitor (SERPIN) fa... 1832 0.0
> AT1G47710.1 | Symbols: | Serine protease inhibitor (SERPIN)
family protein | chr1:17558209-17560269 FORWARD LENGTH=1446
Length=1446
Score = 1832 bits (992), Expect = 0.0
Identities = 1157/1234 (94%), Gaps = 21/1234 (2%)
Strand=Plus/Plus
Query 1 TCACCACCACCACCTCCGGCGAAAATGGACGTGCGTGAATCAATCTCTA-TGCAAAACCA 59
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 39 TCACCACCACAACCTCCGGCGAAAATGGACGTGCGTGAATCAATCTC-ACTGCAAAACCA 97
Query 60 AGTCTCAATGAATCTCGCCAAACACGTAATCACCACCGTCTC-CAAAAACTCCAACGTCG 118
|||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 98 AGTCTCCATGAATCTCGCAAAACACGTAATCACCACCGTCTCTC-AAAACTCCAACGTCA 156
Query 119 TCTTCTCTCCGGCGTCAATCAACGTCATCCTCAGTATAATCGCCGCTGGATCCACCGGCG 178
||||||| ||||| |||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct 157 TCTTCTCACCGGCTTCAATCAACGTCGTACTCAGTATAATCGCCGCTGGATCCGCCGGCG 216
Query 179 CTA-CAAAGGATCAGATCCTCTCGTTCCTCAAATTCTCTTCCACTGATCAGCTTAATTCA 237
||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 217 CTACCAAA-GATCAGATCCTCTCGTTTCTCAAATTCTCTTCCACTGATCAACTTAATTCA 275
Query 238 TTCTCCTCCGATATCGTCTCCGCTGTTCTCGCTGACGGTAGTGCTAACGGTGGTCCTAAG 297
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTCTCTTCCGAAATCGTCTCCGCTGTTCTCGCTGACGGTAGTGCTAACGGTGGTCCTAAG 335
Query 298 CTCTCGGTGGCTAATGGTGTCTGGATCGATAAGTCTCTCTCCTTT-AACCTAT-CTTTCA 355
||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||| |
Sbjct 336 CTCTCGGTGGCTAATGGCGCCTGGATCGATAAGTCTCTCTCCTTTAAACCT-TCCTTT-A 393
Query 356 AGA-AACTTC-TGGAAGATTCGTATAAAGCTGCTTCGAATCAAGCTGATTTTCAATCGAA 413
| | | | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 A-ACAGC-TCTTGGAAGATTCGTATAAAGCTGCTTCGAATCAAGCTGATTTTCAATCGAA 451
Query 414 GGCTGTGGAAGTGACTGCTGAAGTGAATTCATGGGCTGAAAAGGAGACAAATGGTCTCAT 473
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GGCTGTGGAGGTGATTGCTGAAGTGAATTCATGGGCTGAAAAGGAGACAAATGGTCTCAT 511
Query 474 CACTGAGGTTCTTCCAGAAGGAGCAGCTGATAGTATGACCAAACTGATATTTGCAAATGC 533
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 512 CACTGAGGTTCTTCCAGAAGGATCAGCTGATAGTATGACCAAACTGATATTTGCAAATGC 571
Query 534 ATTGTACTTCAAGGGAACATGGAACGAGAAATTCGATGAGTCGTTAACGA-AAGAAGACG 592
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 572 ATTGTACTTCAAGGGAACATGGAACGAGAAATTCGATGAGTCGTTAAC-ACAAGAAGGCG 630
Query 593 ACTTTCACCTTCTTGACGGTAACAAAGTGACTGCACCATTCATGACCAGCAAGAAGAAAC 652
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AGTTTCACCTTCTTGACGGTAACAAAGTGACTGCACCATTCATGACCAGCAAGAAGAAAC 690
Query 653 AATACGTAAGTGCTTACGATGGATTCAAAGTTTTAGGACTTCCATACTTACAAGGACAGG 712
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 691 AATACGTAAGTGCTTACGATGGTTTCAAAGTTTTGGGACTTCCTTACTTACAAGGACAGG 750
Query 713 ATAAACGACAATTCTCCATGTACATTTATCTTCCTGATGCAAACACCGGATTGTCTGATC 772
|||| |||||||||||||||||| |||||||||| |||||||||| |||| |||||||||
Sbjct 751 ATAAGCGACAATTCTCCATGTACTTTTATCTTCCCGATGCAAACAACGGACTGTCTGATC 810
Query 773 TGCTGGAGAAAATAGTTTCTACTCCTGGGTTCTTAGACAGCCACATTCCACGCAGACAAG 832
| ||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct 811 TTCTGGACAAAATAGTTTCCACTCCTGGGTTCTTAGACAACCACATCCCACGCAGACAAG 870
Query 833 TTAAAGTCGGCGAATTCAAGATTCCAAAGTTTAAATTCTCTTTCGGGTTCGACGCTTCAG 892
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 871 TTAAAGTCCGCGAATTCAAGATTCCAAAGTTTAAATTCTCTTTCGGGTTCGATGCTTCAA 930
Query 893 ATGTTTTAAAAGGATTAGGACTTACTTCACCATTCAGTGGTGAAGACGGTCTAACTGAGA 952
|||||||||||||||| ||||| ||||| || ||||| |||||||| ||| |||||||||
Sbjct 931 ATGTTTTAAAAGGATTGGGACTGACTTCGCCTTTCAGCGGTGAAGAAGGTTTAACTGAGA 990
Query 953 TGGTTGAATCTCCAGAAATGGGGAAGAATCTATGCGTATCAAACATTTTCCATAAAGCGT 1012
||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 991 TGGTTGAATCTCCTGAGATGGGGAAGAATCTATGCGTATCGAACATTTTCCATAAAGCGT 1050
Query 1013 GTATCGAAGTGAACGAAGAAGGAACAGAAGCTGCAGCTGCATCAGCTGGAGTTATAAAAC 1072
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1051 GTATCGAAGTGAATGAAGAAGGAACAGAAGCTGCAGCTGCATCAGCTGGAGTTATAAAGC 1110
Query 1073 TAAGAGGATTGGTTATGGAGGAAGAGGAGATAGATTTTGTTGCAGACCATCCGTTTCTAT 1132
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1111 TAAGAGGATTGCTTATGGAGGAAGATGAAATAGATTTTGTTGCAGACCATCCGTTTCTAT 1170
Query 1133 TGGTGATCACAGAAAACATAACAGGAGTGATTCTGTTCATTGGCCAAGTTGTTGATCCGT 1192
||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1171 TGGTGGTCACAGAGAACATAACAGGAGTGGTTCTGTTCATTGGCCAAGTTGTTGATCCGT 1230
Query 1193 TGCATTAA---AA--CTAATGTGGAAGCTTTTGG 1221
|||||||| || |||||||||||| ||||||
Sbjct 1231 TGCATTAATCTAAAGCTAATGTGGAAGTTTTTGG 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5