BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923116

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar ...   736    0.0  


> AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar 
inhibitor of fructosidase 1 | chr1:17681157-17683629 REVERSE 
LENGTH=1528
Length=1528

 Score =  736 bits (398),  Expect = 0.0
 Identities = 433/450 (96%), Gaps = 2/450 (0%)
 Strand=Plus/Plus

Query  13   tgatgatgatggtgatggtgatggtgagtgaAGGAAGTATAATAGAG-CAGACATGTAAA  71
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  148  TGATGATGATGGTGATGGTGATGGTGAGTGAAGGAAGTATAATAGAGCCA-ACATGTAAA  206

Query  72   GAGACACCAGACTTCAATCTTTGTGTGTCTCTCCTTAACTCCGATCCACGTGGTTCCTCT  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  207  GAGACACCAGACTTCAATCTTTGTGTGTCTCTCCTTAACTCCGATCCACGTGGTTCCTCT  266

Query  132  GCCGACACTTCTGGCCTCGCTCTCATCCTCATTGATAAAATCAAGGGACTGACAACAAAA  191
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  267  GCCGACACTTCTGGCCTCGCTCTCATCCTCATTGATAAAATCAAGGGCCTGGCAACAAAA  326

Query  192  ACCTTGAACGAGATCAACGGTCTATATAAGAAGAGACCAGAACTAAAACGGGCTTTGGAC  251
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  327  ACTTTGAACGAGATCAACGGTCTATATAAGAAGAGACCAGAACTAAAACGGGCTTTGGAT  386

Query  252  GAATGTAGTCGGAGATACAAAACGATCTTATACGCTGATGTTCCCGAAGCCATTGAAGCT  311
            ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  387  GAATGTAGTCGAAGATACAAAACGATCTTAAACGCTGATGTTCCCGAAGCCATTGAAGCT  446

Query  312  ATTTCTAAAGGAGTTCCGAAATTCGGCGAAGATGGTGTGATCGACGCCGGTGTCGAAGCT  371
            || ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct  447  ATCTCTAAAGGAGTCCCCAAATTCGGCGAAGACGGTGTGATCGACGCCGGTGTCGAAGCT  506

Query  372  TCTGTTTGTGAAGGAGGGTTTAAAGGGAAATCTCCGTTGACTAGTTTGACCAAATCAATG  431
            ||||||||| ||||||||||||| ||||  |||||||||||||||||||| |||||||||
Sbjct  507  TCTGTTTGTCAAGGAGGGTTTAATGGGAGTTCTCCGTTGACTAGTTTGACTAAATCAATG  566

Query  432  CAAAAAATCTCTAATGTGACTAGAGCCATT  461
            ||||||||||||||||||||||||||||||
Sbjct  567  CAAAAAATCTCTAATGTGACTAGAGCCATT  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5