BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923134
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48100.1 | Symbols: | Pectin lyase-like superfamily protein... 2296 0.0
> AT1G48100.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:17766874-17769951 FORWARD LENGTH=1801
Length=1801
Score = 2296 bits (1243), Expect = 0.0
Identities = 1398/1473 (95%), Gaps = 9/1473 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTTCTCAAAGCTAAACAATGCGCAGTCTCAGTGGCATTCTCGTGATTTACATAAT 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 26 TCTCTCTTCTCAAAGCTAAACAATGCGCAGACTCAGTGGCATTCTCGTGATTTACATAAT 85
Query 61 CTCCACTGTCCTCTTCGGACATTTCACTTACGTGGCACAAGGAAGATACCATTACCACAA 120
||||||||||||||| ||||||||||| ||||||||| || |||||| |||||||||||
Sbjct 86 CTCCACTGTCCTCTTTGGACATTTCACCAACGTGGCACGAGCAAGATATCATTACCACAA 145
Query 121 GAGTCGTCACGGCCG-AACGCAtcctcttcctcctcctcctcctcctcctcTTGAAACGG 179
| | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GGGCCGTCACGG-CGTAACGCATCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTGAAACGG 204
Query 180 CCAATCCACCTGATCAAGTACCC-TCTGACCCGTACCCGAATCCAAACCCGGCTCCGGGA 238
||||||||||||||||||| ||| || ||||||||||||| |||| ||||||||||||||
Sbjct 205 CCAATCCACCTGATCAAGT-CCCTTCCGACCCGTACCCGAGTCCAGACCCGGCTCCGGGA 263
Query 239 GATTCCGACTC---ATGCGTTTTTGACGTTACGTCGTTTGGGGCAGTGGGTGATGGCTCA 295
||||| ||||| |||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 264 GATTCTGACTCAGGATGCGTCTTTGACGTTACGTCGTTTGGAGCAGTGGGTGATGGGTCA 323
Query 296 TGCGACGATACGGCGGCGTTTCAAAATGCATGGAAAGCCGCTTGTGCTGTTGAATCCGGC 355
|||||||||||||| || |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 324 TGCGACGATACGGCAGCATTTCAAGATGCATGGAAAGCCGCTTGTGCTGTCGAATCCGGC 383
Query 356 GTCGTTTTGGCACCTGAAGGCGGCGTTTTTAAAATCACCTCTACTATCTTCTCCGGTCCA 415
||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 384 GTCGTTTTGGCACCTGAAGGCGGCGTTTTCAAAATCACCTCCACTATTTTTTCCGGTCCA 443
Query 416 TGTAAACCGGGACTCGTATTTCAGTTGGACGGCGTGTTGATGCCACCGGACGGACCAGAA 475
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 444 TGTAAACCGGGTCTTGTATTTCAGTTGGACGGAGTGTTGATGCCACCGGACGGACCAGAG 503
Query 476 GAATGGCCAGAGAAAGACAATAAAAACCAGTGGTTGGTTTTTTACCGCCTCGACGGTATC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 504 GAATGGCCAGAGAAAGACAATAAAAACCAGTGGTTGGTTTTTTACCGCCTCGACGGTTTC 563
Query 536 ACATTTTCCGGCAAAGGCACCGTCGAAGGCAATGGTCAAAAATGGTGGGATCTACCTTGC 595
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ACGTTTTCAGGCAAAGGCACCGTCGAAGGCAATGGTCAAAAATGGTGGGATCTACCTTGC 623
Query 596 AAGCCCCACAGGGGTCCAGACGGATCATCATCGTCGGGACCATGCGAAAGTCCGACTATG 655
||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 624 AAGCCCCACAGGGGTCCAGACGGATCATCATCGTCCGGACCATGTGCAAGTCCGACTATG 683
Query 656 ATTAGGTTTTTCATGAGCAATAATATAGAGGTGAAAGGATTAAGAATCCAAAACAGTCCA 715
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 684 ATTAGGTTTTTCATGAGCAACAATATAGAGGTTAAAGGATTAAGAATCCAAAACAGTCCA 743
Query 716 CAATTTCACATGAAATTCGACGGATGTCAAGGAGTTTTAATAAACGAAATCCAAATATCG 775
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 744 CAATTTCACATGAAATTCGACGGATGTCAAGGAGTGTTAATAAACGAAATCCAAATATCG 803
Query 776 TCACCAAAACTAAGTCCAAACACCGACGGTATCCATCTCGGAAACACAAGATCTGTTGGC 835
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 804 TCACCAAAACTAAGTCCAAACACAGATGGTATCCATCTCGGAAACACAAGATCTGTTGGC 863
Query 836 ATCTACAATTCTGTCGTTAGCAACGGGGACGATTGCATTTCGATTGGAACTGGCTGCTCA 895
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 864 ATTTACAATTCTGTCGTTAGCAACGGGGACGATTGCATATCGATTGGAACTGGCTGCTCA 923
Query 896 GATGTTGACATTCAAGGTGTCACTTGTGGCCCTAGTCACGGGATCAGCATTGGGAGCTTA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 GATGTTGACATTCAAGGTGTCACTTGTGGCCCTAGTCACGGGATCAGCATTGGGAGCTTA 983
Query 956 GGCGTGCACAATTCACAAGCCTGCGTTTCAAACATAACAGTCAGAAACACCGTGATTCGC 1015
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 984 GGCGTGCACAATTCACAAGCCTGCGTTTCAAACATAACAGTGAGAAACACCGTGATTCGC 1043
Query 1016 GATTCCGATAACGGCCTCCGAGTCAAAACCTGGCAAGGCGGCACCGGATCAGTCTCAAAT 1075
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 1044 GATTCCGATAACGGCCTCCGAGTCAAAACATGGCAAGGCGGTACCGGATCAGTATCAAAT 1103
Query 1076 CTCCTCTTCCAAAACATCCAAATGGAAAACGTCCTCAATTGCATAATCGTCGACCAATAC 1135
||||||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 1104 CTCCTCTTCGAAAACATCCAAATGGAGAACGTTCTCAATTGCATAATCGTCGATCAATAC 1163
Query 1136 TATTGCCAATCCAAAGATTGTCGCAACGAAACATCGGCGGTTAAAGTCTTCGACGTCGAG 1195
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 1164 TATTGCCAATCCAAAGATTGCCGTAACGAAACATCGGCGGTTAAAGTATTCGACGTCGAG 1223
Query 1196 TATCGAAACATCAAAGGCACTTACGACGTCAGAAGTCCACCGATTCATTTCGCCTGTAGC 1255
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1224 TATCGGAACATTAAAGGTACTTACGACGTTAGAAGTCCACCGATTCATTTCGCTTGTAGC 1283
Query 1256 GATACCGTCGCTTGTACGAATATAACGATGTCGGAGGTTGAGTTATTGCCGGAGGAAGGT 1315
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1284 GATACCGTCGCGTGTACGAATATAACGATGTCGGAGGTTGAGTTATTGCCGGAAGAAGGT 1343
Query 1316 GAGCTTGTTGATGATCCGTTTTGTTGGAATGCTTATGGGACTCAGGAGACGTTGACGATT 1375
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1344 GAGCTTGTTGATGATCCGTTTTGTTGGAATGCTTATGGGAAACAAGAGACGTTGACGATT 1403
Query 1376 CCGCCGATTGATTGTTTGCTTGGTGGATCTCCGGTGGTGGAGGAAGCGTTTGATTCGAAT 1435
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1404 CCGCCGATTGATTGTTTGCTTGATGGATCTCCGGTGGTGGAGGAAGCATATGATTCGAAT 1463
Query 1436 TATAGTTGTTGAAT--GAATCTCTCCGGTGAAT 1466
||| |||||||||| |||||||||||||||||
Sbjct 1464 TATGGTTGTTGAATTTGAATCTCTCCGGTGAAT 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5