BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923259
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49010.1 | Symbols: | Duplicated homeodomain-like superfami... 1565 0.0
> AT1G49010.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr1:18132645-18133925 FORWARD LENGTH=1161
Length=1161
Score = 1565 bits (847), Expect = 0.0
Identities = 941/984 (96%), Gaps = 16/984 (2%)
Strand=Plus/Plus
Query 3 AAAGATTGAAGCAATCGAATGGAGAGTGTGGTGGCAACATGGAGCAGAGAAGAAGAGAAA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 AAAGATTGAAGCAATCGAATGGAGAGTGTGGTGGCAACATGGAGCAGAGAAGAAGAGAAA 111
Query 63 GCATTCGAGAACGCAATTGCGTTGCATTGTGTAGAGGAAGAGATAACAGAGGACCAATGG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 112 GCATTCGAGAACGCAATTGCGTTGCATTGTGTAGAGGAAGAGATAACAGAGGATCAATGG 171
Query 123 AACAAAATGGCGTCAATGGTTCCAAGCAAAGCTTTAGAAGAAGTAAAGAAACATTACCAA 182
||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 172 AACAAAATGTCGTCAATGGTACCAAGCAAAGCCTTAGAAGAAGTAAAGAAACATTACCAA 231
Query 183 ATCCTTTTAGAAGATGTCAAAGCAATCGAGAATGGTCAAGTTCCTTTACCTCGTTATTAT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 ATCCTTTTAGAAGATGTCAAAGCAATCGAGAATGGTCAAGTTCCTTTACCTCGTTATCAT 291
Query 243 CACCGCAAAGGTCTCATCGTCGAT---G-A--AGCAGCA---ACTTCTCCTGCTAACAGA 293
|||||||||||||||||||| ||| | | ||||||| ||||||||||| ||||||
Sbjct 292 CACCGCAAAGGTCTCATCGTAGATGAAGCAGCAGCAGCAGCTACTTCTCCTGCCAACAGA 351
Query 294 GACTCTCATTCCTCTGGATCATCGGAGAAGAAACCAAACCCTGGAACCTCCGGGATAAGT 353
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 352 GACTCTCATTCCTCTGGATCATCTGAGAAGAAACCAAATCCTGGCACCTCCGGGATAAGT 411
Query 354 AGCTCCAATGGAGGAAGAAGTGGTGGCTCCAGAGCTGAGCAAGAGAGAAGAAAAGGGATT 413
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 412 AGCTCCAATGGAGGAAGAAGTGGTGGCTCGAGAGCTGAGCAAGAGAGAAGAAAAGGGATT 471
Query 414 CCATGGACTGAAGAAGAGCATCGGTTGTTTCTTTTGGGTTTGGACAAATTTGGGAAAGGA 473
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 472 CCATGGACTGAAGAAGAGCATCGGTTGTTTCTTTTGGGTTTGGACAAGTTTGGGAAAGGA 531
Query 474 GATTGGAGAAGCATTTCTAGGAACTTTGTGATCTCAAGAACTCCGACACAAGTTGCAAGT 533
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 GATTGGAGAAGCATTTCAAGGAACTTTGTGATCTCAAGAACTCCAACACAAGTTGCAAGT 591
Query 534 CATGCTCAGAAATACTTCATCCGGCTTAACTCGATGAACCGAGATAGAAGGCGGTCAAGC 593
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 592 CATGCTCAAAAATACTTCATCAGGCTTAACTCGATGAACCGAGATAGAAGGCGGTCTAGC 651
Query 594 ATTCACGACATCACCACTGTGAACAATCAAGCTCCTGCGGTTACAGGAGGACAACAACAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 652 ATTCACGACATCACCACTGTGAACAATCAAGCTCCTGCGGTTACAGGAGGAGGACAACAA 711
Query 654 CAACAAGTGGTTAAACATAGACCAGCTCAGccacaaccacaaccacaaccgcaaccacaa 713
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 CCGCAAGTGGTTAAACATAGACCAGCTCAGCCACAACCACAGCCACAACCGCAACCACAA 771
Query 714 ccacatcatccaccaacaaTGGCTGGATTAGGGATGTATGGTGGTGCGCCTGTGGGACAA 773
| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 772 CAACATCATCCCCCAACAATGGCTGGATTAGGGATGTATGGTGGTGCGCCAGTGGGACAA 831
Query 774 CCGATCATCGCACCACCTGATCATATGGGTTCAGCTGTTGGAACACCTGTGATGCTTCCA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CCGATCATCGCACCACCTGATCATATGGGTTCAGCTGTTGGAACACCTGTGATGCTTCCA 891
Query 834 CCTCCAATGGGAACTCATCATCA-C-C-ATCACCATCATCTTGGAGTTGCTCCTTATGCT 890
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 892 CCTCCAATGGGAACTCATCATCATCACCATCACCATCATCTTGGAGTTGCTCCTTATGCT 951
Query 891 GTACCGGCTTATCCGGTACCACCATTACCGCAACAACATCCAGCTCCGTCGACAATGCAC 950
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 952 GTACCGGCTTATCCGGTACCGCCATTACCGCAGCAACATCCAGCTCCGTCGACAATGCAC 1011
Query 951 TGAC--AA--CAATACAGTTGGTA 970
|||| || ||||||||||||||
Sbjct 1012 TGACTGAAAACAATACAGTTGGTA 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5