BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923431
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease prote... 1941 0.0
> AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic
subunit 1 | chr1:18501570-18504609 REVERSE LENGTH=1677
Length=1677
Score = 1941 bits (1051), Expect = 0.0
Identities = 1154/1204 (96%), Gaps = 5/1204 (0%)
Strand=Plus/Plus
Query 5 GGTAGCTAAATCGGAGATGGCGACTTCTCTGGTCTCTCCTCTTACTTCACAGCTCAACCA 64
||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 132 GGTTGCTAAATCGAAGATGGCGACTGCTCTGGTTTCTCCTCTTACTTCACAACTCAACCA 191
Query 65 TGAAGCTGTCTGTTCCAAGTCTGTGCTT-CCCAAATCACCGTTCATGTCTGGATCTAAGC 123
|||||||||||||||||||| |||| || |||||||| ||||||||||| ||||||||||
Sbjct 192 TGAAGCTGTCTGTTCCAAGTTTGTG-TTACCCAAATCGCCGTTCATGTCGGGATCTAAGC 250
Query 124 TCTTTTCATCGAACATGCCTTGCTCTACTGTTCCTAGACGTACAAGGATATCACACTGCT 183
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 251 TCTTTTCATCGAACATGCCTTGCTCTACTGTTCCTAGACGCACAAGAAGATCACACTGCT 310
Query 184 TTGCTTCTGCTAAAGATATGAGCTTTGACCATATCCCTAAACAATTTCGAGGAGACAATC 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 311 TTGCTTCTGCTAAAGATATGAGCTTTGACCATATCCCTAAACAATTTCGTGGAGACAATC 370
Query 244 TCAAAGACGGAGTGGTGCAGAACTTCAAGAATGTACCGCAATATTTTTACGGGCTGAATC 303
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 371 TCAAAGACGGAGTGATGCAGAACTTCAAGAACGTACCACAATATTTTTACGGGCTTAATT 430
Query 304 CAGCTCAAATGGATATGTTCATGACGGAGGATAGCCCTGTCCGTAGGCAAGCGGAAAAAG 363
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 431 CAGCTCAAATGGATATGTTCATGACAGAAGATAGCCCTGTCCGTAGGCAAGCGGAAAAAG 490
Query 364 TTACAGAGGAAAGCATCTCGTCTAGAAGA-AATTATTTGGACAATGGAGGAATATGGAGT 422
||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||
Sbjct 491 TTACAGAGGAAAGCATCTCGTCTAGAA-ATAACTATTTGAACAATGGAGGAATATGGAGT 549
Query 423 ATGTCCGGTATGAATGCAGCAGATGCTAGAAGATATAGCATGAGTGTCCAGATGTACAGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 ATGTCCGGTATGAATGCAGCAGATGCTAGAAGATATAGCATGAGTGTCCAGATGTACAGA 609
Query 483 GGTGGAGGTGGCGGAGGAGGATCTGAAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCT 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GGTGGAGGTGGCGGCGGAGGATCTGAAAGACCAAGAACTGCTCCTCCAGATTTGCCTTCT 669
Query 543 TTGCTATTGGATGCTCGGATATGCTACCTTGGAATGCCAATCGTACCTGCAGTTACTGAG 602
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 670 TTGCTATTGGATGCTCGCATATGCTACCTTGGCATGCCAATCGTACCTGCAGTTACTGAG 729
Query 603 TTACTCGTTGCTCAATTTATGTGGCTAGATTATGATAACCCAACAAAGCCCATCTACCTA 662
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 730 TTACTCGTTGCTCAATTTATGTGGTTAGACTATGATAACCCAACAAAGCCCATCTACTTA 789
Query 663 TATATAAATTCACCCGGGACCCAGAATGAGAAGATGGAAACTGTTGGGTCAGAAACAGAG 722
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 790 TATATAAATTCACCCGGGACCCAGAATGAGAAGATGGAAACTGTTGGATCAGAAACAGAG 849
Query 723 GCTTATGCCATAGCTGATACCATCTCTTATTGCAAATCAGATGTATACACTATCAATTGT 782
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 850 GCTTATGCCATAGCCGATACTATTTCTTATTGCAAATCAGATGTATACACTATCAATTGT 909
Query 783 GGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGGAAAAAAGGTTATCGTGCC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GGCATGGCTTTTGGTCAAGCAGCAATGCTTCTTTCTCTCGGGAAAAAAGGTTATCGTGCC 969
Query 843 GTACAACCACATTCATCAACAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GTACAACCACATTCATCAACAAAATTATATCTGCCAAAAGTAAACAGATCGAGTGGAGCT 1029
Query 903 GCCATAGACATGTGGATAAAGGCCAAGGAACTTGATGCAAATACTGAGTACTACATCGAG 962
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1030 GCCATAGACATGTGGATAAAGGCCAAGGAACTTGATGCAAATACCGAGTACTACATCGAG 1089
Query 963 CTGTTAGCGAAGGGAACAGGGAAATCCAAAGAGCAGATCAACGAGGACATCAAGCGACCT 1022
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 CTGTTAGCTAAGGGAACAGGGAAATCCAAAGAGCAGATCAACGAGGACATCAAGCGACCT 1149
Query 1023 AAATATCTCCAAGCACAAGCAGCTATTGACTATGGAATTGCAGACAAGATAGCGGACTCG 1082
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1150 AAATATCTCCAAGCTCAAGCAGCCATTGACTATGGAATTGCAGACAAGATAGCTGACTCG 1209
Query 1083 CAGGATAGTTCCTTCGAGAAACGGGATTATGATGGGACTCTTGCCCAGAGAGCCATGAGA 1142
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1210 CAGGACAGTTCTTTCGAGAAACGGGATTACGATGGGACCCTTGCCCAGAGAGCTATGAGA 1269
Query 1143 CCTGGAGGAGGCAGCCCAACAGCTCCAGCCGGACTAAGATGATCAATTCCCATTAGAAA- 1201
|||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1270 CCTGGAGGAGGCAGTCCAGCAGCTCCAGCCGGACTAAGATGATCAATTCCCACCAGAAAG 1329
Query 1202 AAAG 1205
||||
Sbjct 1330 AAAG 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5