BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923463 Length=2267 Score E Sequences producing significant alignments: (Bits) Value AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614209-... 3572 0.0 AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular proteas... 1718 0.0 > AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614209-18617063 REVERSE LENGTH=2473 Length=2473 Score = 3572 bits (1934), Expect = 0.0 Identities = 2163/2271 (95%), Gaps = 26/2271 (1%) Strand=Plus/Plus Query 4 GAAGAAGAAGAAACAGAGCTGCTTCAATGGCGGCCACAGCTTCTAACTCATTACTACG-- 61 |||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 108 GAAGAAGAAGAAACAGAGCTGCTTCAAT----G-----GCTTCTAACTCATTACTACGTT 158 Query 62 -TTCTTCAAA--T-TTCTTAGGATCCCATATCATAATCTCATCTCCCACCCCTAAAACCA 117 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159 CTTCTTCAAATTTCTTCTTAGGATCCCATATCATAATCTCATCTCCCACCCCTAAAACCA 218 Query 118 CCAGAAAACCCTCTTTCCCTTTCTCCTTCGCCTCCCGTGCAAAATACCAAATCACTCGAT 177 |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 219 CCAGAAAACCCTCTTTCCCTTTCTCCTTCGTCTCCCGTGCTAAATACCAAATCACTCGAT 278 Query 178 CGTCTCTAGAC-AACAATTCTCCAAATGGTAAACCCAATTCGCCACTCTCGTCGCAAGTT 236 |||||| |||| || ||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 279 CGTCTCAAGACGAA-AATTCGCCAAATGGTAAACCCAATTCGCCATTCTCGTCGCAAGTA 337 Query 237 GCTTTAGCAGCTATTCTGTTCTCTTCAATTTCATCATCTCCGCCGCGAGCTTTAGCTGTA 296 || |||||||||||||| | |||||||||||||| | | |||||| ||||||||||||| Sbjct 338 GCCTTAGCAGCTATTCTACTATCTTCAATTTCATC-T-T-CGCCGCTAGCTTTAGCTGTA 394 Query 297 GTGGACGAACCAGCTTCTCCGTCTCTCGTTGTGGAAGCTCAAGCTCAAGCAGTGAAGCCA 356 |||||||||||||||||||||||| ||||| | || || ||||||| ||||||||| Sbjct 395 GTGGACGAACCAGCTTCTCCGTCTGTCGTTAT---AG---AATCTCAAGCTGTGAAGCCA 448 Query 357 TCGACGTCATCGCCGTTGTTCATTCAGAACGAGATACTTAAAGCACCTAGTCCTAAATCA 416 |||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||| Sbjct 449 TCGACGCCATCGCCATTGTTCATTCAGAACGAGATACTTAAGGCTCCTAGTCCTAAATCA 508 Query 417 TCGGATCTTCCTGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCGGTGAAGAAA 476 |||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 509 TCGGATCTCCCAGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCTGTGAAGAAA 568 Query 477 GGTAAGGTGGAGAGAGTTAGATTCAGCAAAGACGGTTCTGTTGTTCAGCTTACTGCTGTC 536 || || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 569 GGGAAAGTCGAGAGAGTTAGATTCAGCAAAGATGGTTCTGTTGTTCAGCTTACTGCCGTC 628 Query 537 GACAATCGCCGTGCCTCCGTCATCGTCCCTAACGACCCTGACCTTATTGATATCTTGGCT 596 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 629 GACAATCGCCGTGCTTCAGTCATCGTCCCTAACGACCCTGACCTTATTGATATCTTGGCT 688 Query 597 ATGAACGGAGTTGATATATCGGTTTCTGAAGGAGAATCCTCTGGCAATGACTTGTTCACT 656 |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 689 ATGAACGGAGTTGATATATCCGTCTCTGAAGGAGAATCCTCAGGCAATGACTTGTTCACT 748 Query 657 GTCATTGGAAACTTGATTTTCCCGCTTTTGGCCTTTGGTGGACTCTTCTTGCTTTTCAGG 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 749 GTCATTGGAAACTTGATTTTCCCGCTTTTGGCCTTTGGTGGACTCTTCTTGCTTTTCAGG 808 Query 717 CGAGCTCAGGGCGGTCCTGGTGGTGGCCCTGGAGGCTTGGGTGGTCCTATGGATTTCGGA 776 ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 809 CGAGCTCAGGGAGGCCCTGGTGGTGGTCCTGGTGGCTTGGGTGGTCCTATGGATTTCGGA 868 Query 777 CGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTGTCATTCGCAGATGTTGCT 836 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 869 CGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTATCATTTGCAGATGTTGCT 928 Query 837 GGTGCTGATCAAGCTAAGTTGGAGTTACAGGAAGTTGTGGATTTCTTGAAGAATCCTGAT 896 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 929 GGGGCTGATCAAGCTAAGTTGGAGTTACAGGAAGTTGTGGATTTCTTGAAGAATCCTGAT 988 Query 897 AAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTTGTTGGACCGCCTGGT 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 989 AAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTTGTTGGACCGCCTGGT 1048 Query 957 ACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCAGGAGTACCGTTCTTTTCT 1016 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 1049 ACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCTGGAGTGCCGTTCTTCTCT 1108 Query 1017 TGCGCAGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGCATCTAGAGTTAGGGAT 1076 ||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 1109 TGCGCGGCCTCGGAGTTCGTAGAGCTTTTTGTGGGTGTGGGTGCATCGAGAGTTAGGGAT 1168 Query 1077 TTGTTCGAGAAGGCTAAGTCGAAAGCACCTTGTATTGTATTCATTGATGAGATTGATGCT 1136 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| Sbjct 1169 TTGTTCGAGAAGGCTAAGTCTAAAGCCCCTTGTATTGTATTCATTGATGAGATTGACGCT 1228 Query 1137 GTGGGGAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAGAGAACAGACTATT 1196 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1229 GTGGGTAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGAGAGAGAACAGACTATT 1288 Query 1197 AATCAGTTGTTGACGGAGATGGATGGATTTTCTGGCAACTCTGGTGTGATAGTTTTGGCA 1256 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1289 AATCAGCTGTTGACAGAGATGGATGGATTTTCTGGCAACTCTGGTGTGATAGTTTTGGCA 1348 Query 1257 GCTACTAATAGGCCGGACGTTCTTGATTCGGCACTGTTGAGGCCTGGAAGGTTTGATCGA 1316 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1349 GCTACGAATAGGCCGGACGTTCTTGATTCGGCTTTGTTGAGGCCTGGAAGGTTTGATCGA 1408 Query 1317 CAGGTTACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTCCAGGTTCATTCT 1376 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1409 CAGGTCACGGTGGATAGGCCTGATGTGGCTGGCAGAGTCAAGATTCTTCAGGTTCATTCT 1468 Query 1377 AGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTGCGAGGAGGACCCCCGGT 1436 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 1469 AGGGGGAAGGCACTCGGTAAAGATGTGGACTTTGACAAGGTTGCCAGAAGGACCCCTGGT 1528 Query 1437 TTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATTCTTGCAGCCAGGCGT 1496 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1529 TTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGGCGATTCTTGCGGCTAGGCGT 1588 Query 1497 GAGCTTAAGGAGATAAGCAAGGATGAAATCTCTGATGCTCTTGAGAGGATCATTGCTGGA 1556 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1589 GAGCTTAAGGAAATAAGCAAGGATGAAATCTCTGATGCTCTTGAGAGGATCATTGCTGGA 1648 Query 1557 CCTGAGAAGAAGAATGCAGTTGTCTCTGATGAGAAGAAGAGACTTGTTGCATACCATGAG 1616 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1649 CCTGAGAAGAAGAATGCAGTTGTCTCTGAAGAGAAGAAGAGACTTGTTGCATACCATGAG 1708 Query 1617 GCTGGCCATGCTCTAGTGGGTGCTCTTATGCCGGAATATGATCCGGTTGCAAAGATTTCC 1676 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1709 GCTGGTCATGCTCTAGTGGGTGCTCTTATGCCAGAATATGATCCGGTTGCAAAGATTTCT 1768 Query 1677 ATCATTCCTCGTGGCCAAGCTGGTGGGCTCACtttttttGCTCCAAGCGAAGAAAGACTT 1736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1769 ATCATTCCTCGTGGCCAAGCTGGTGGGCTCACTTTTTTTGCTCCAAGCGAAGAAAGACTT 1828 Query 1737 GAGTCTGGATTGTACAGCAGGAGCTACCTCGAGAATCAAATGGCTGTTGCACTTGGCGGA 1796 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1829 GAGTCTGGATTGTACAGTAGGAGCTACCTTGAGAATCAAATGGCTGTTGCACTTGGCGGA 1888 Query 1797 AGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACCGGAGCATCAAATGAT 1856 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1889 AGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGACGACTGGAGCATCAAATGAT 1948 Query 1857 TTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTTGGCTTCAGCAAAAAG 1916 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1949 TTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGAGATTTGGGTTCAGCAAAAAG 2008 Query 1917 ATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTTATGGGTCAACAAATGTCA 1976 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2009 ATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCTTCATGGGTCAACAAATGTCA 2068 Query 1977 TCACAGAAAGATTACTCAATGGCAACTGCAGATATTGTAGATGCTGAGGTGCGAGAGTTA 2036 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2069 TCACAGAAAGATTACTCAATGGCAACTGCGGATATTGTAGATGCTGAGGTGCGAGAGTTA 2128 Query 2037 GTTGAGAAGGCATACAAGAGAGCAACGGAGATCATAACAACTCATATTGATATCCTACAC 2096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2129 GTTGAGAAGGCATACAAGAGAGCAACGGAGATCATAACAACTCATATTGATATCCTACAC 2188 Query 2097 AAGCTTGCACAGCTCCTCATCGAGAAAGAAACTGTTGACGGCGAAGAGTTCATGAGCCTC 2156 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 2189 AAGCTTGCACAGCTCCTGATCGAGAAAGAAACTGTTGACGGTGAAGAGTTCATGAGTCTC 2248 Query 2157 TTTATTGACGGCCAAGCTGAGTTGTATATATCTTGATTCCTCAAAGTTGTCATTGCTTAG 2216 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 2249 TTTATTGACGGCCAAGCTGAGTTGTATATTTCTTGATTCCTCAAAGTTGCCATTGCTTAG 2308 Query 2217 TGCTTACAATATCATTAGCTTATAAGTATATTTGTGTTCATATGTGTCACC 2267 ||||||||||| ||| |||| ||||||||||| |||||||||||||||||| Sbjct 2309 TGCTTACAATACCATAAGCTAATAAGTATATTCGTGTTCATATGTGTCACC 2359 > AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease family | chr5:16902486-16905294 FORWARD LENGTH=2480 Length=2480 Score = 1718 bits (930), Expect = 0.0 Identities = 1516/1798 (84%), Gaps = 44/1798 (2%) Strand=Plus/Plus Query 412 AATCATCGGATCTTCCTGAAGGATCACAGTGGCGATACAGCGAGTTTCTTAACGCGGTGA 471 ||||||| ||||||||||| ||| |||| ||||||||||| |||||||| || || |||| Sbjct 514 AATCATCAGATCTTCCTGATGGAACACAATGGCGATACAGTGAGTTTCTAAATGCTGTGA 573 Query 472 AGAAAGGTAAGGTGGAGAGAGT-TAGATTCAGCAAAGACGGTTCTGTTGTTCAGCTT-AC 529 |||||||||| || |||||||| || || || ||||| ||||||||| ||||| || || Sbjct 574 AGAAAGGTAAAGTTGAGAGAGTGAAG-TTTAGTAAAGATGGTTCTGTTCTTCAG-TTAAC 631 Query 530 TGCTGTCGACAATCGCCGTGCCT-CCGTCATCGTCCCTAACGACCCTGACCTT-ATTGAT 587 ||||| || ||||| |||| || | || || || ||||| || ||||| || |||||| Sbjct 632 AGCTGTTGATAATCGTCGTG-CTACTGTTATTGTTCCTAATGATCCTGA-TTTGATTGAT 689 Query 588 ATCTTGGCTATGAACGGAGTTGATATATCGGTTTCTGAAGGAGAATCCTCTGGCAATGAC 647 |||||||| ||||| || ||||||||||| ||||||||||||||| ||| |||| Sbjct 690 ATCTTGGCGATGAATGGTGTTGATATATCTGTTTCTGAAGGAGAA---GGTGGAAATGGG 746 Query 648 TTG-TTCACTGTCATTGGAAACTTGATTTTCCCGCTT-TTGGCCTTTGGTGGACTCTTCT 705 ||| || | | ||||||| || ||| |||| || || ||||| ||||| || | || | Sbjct 747 TTGTTTGA-TTTCATTGGTAATTTGCTTTTTCC-TTTGTTGGCTTTTGGAGGGTTGTT-T 803 Query 706 T-GCT-TTTCAG-GCGAGCTCAGGGCGGTCCTGGTGGTGGCCCTGGAGGCTTGGGTGGTC 762 | || ||| || | ||| ||| || ||| |||||||| |||||||| || || |||| Sbjct 804 TATCTCTTT-AGAG-GAGGTCAAGGAGGTGCTGGTGGT---CCTGGAGGTTTAGGAGGTC 858 Query 763 CTATGGATTTCGGACGTTCTAAATCCAAGTTCCAGGAAGTGCCTGAGACTGGTGTGTCAT 822 |||||||||||||| | || ||||| ||||| |||||||||||||| || |||||| ||| Sbjct 859 CTATGGATTTCGGAAGATCGAAATCGAAGTTTCAGGAAGTGCCTGAAACCGGTGTGACAT 918 Query 823 TCGCAGATGTTGCTGGTGCTGATCAAGCTAAG-TTGGAGTTACAGGAAGTTGTGGATTTC 881 | | ||||||||||| ||||||||||||||| || |||||||| |||||||| |||||| Sbjct 919 TTGGTGATGTTGCTGGAGCTGATCAAGCTAAGCTT-GAGTTACAAGAAGTTGTTGATTTC 977 Query 882 TTGAAGAATCCTGATAAGTACACAGCCTTGGGTGCTAAGATTCCTAAAGGGTGTTTGCTT 941 |||||||||||||||||||| || || || |||||||||||||||||||| |||||| || Sbjct 978 TTGAAGAATCCTGATAAGTATACTGCGTTAGGTGCTAAGATTCCTAAAGGTTGTTTG-TT 1036 Query 942 -GTTGGACCGCCTGGTACGGGTAAGACACTCCTGGCTAGGGCGGTGGCTGGGGAAGCAGG 1000 ||||| || || |||||||| ||||| || ||||||| || |||||||| ||||| || Sbjct 1037 GGTTGGTCCACCGGGTACGGGGAAGACGCTTTTGGCTAGAGCTGTGGCTGGAGAAGCTGG 1096 Query 1001 AGTACCGTTCTTTTCTTGCGCAGCCTCGGAGTTTGTGGAGCTTTTTGTGGGTGTGGGTGC 1060 ||| ||||||||||| || || || ||||||||||| ||||||||||| ||||||||||| Sbjct 1097 AGTGCCGTTCTTTTCGTGTGCTGCTTCGGAGTTTGTTGAGCTTTTTGTTGGTGTGGGTGC 1156 Query 1061 ATCTAGAGTTAGGGATTTGTTCGAGAAGGCTAAGTCGAAAGCACCTTGTATTGTATTCAT 1120 ||||||||||||||||| || |||||||| || |||||||| ||||||||||| || || Sbjct 1157 TTCTAGAGTTAGGGATTTATTTGAGAAGGCGAAATCGAAAGCTCCTTGTATTGTGTTTAT 1216 Query 1121 TGATGAGATTGATGCTGTGGGGAGGCAGAGAGGAGCTGGGATGGGAGGAGGAAATGATGA 1180 |||||||||||||||||| || || || ||||||||||||||||| || ||||||||||| Sbjct 1217 TGATGAGATTGATGCTGTTGGTAGACAAAGAGGAGCTGGGATGGGTGGTGGAAATGATGA 1276 Query 1181 GAGAGAACAGACTATTAATCAG-TTGTTGACGGAGATGGATGGATTTTCTGGCAACTCTG 1239 ||| |||||||||||||||||| || ||||| ||||||||||| |||||||| ||||||| Sbjct 1277 GAGGGAACAGACTATTAATCAGCTT-TTGACTGAGATGGATGGGTTTTCTGGTAACTCTG 1335 Query 1240 GTGTGATAGTTTTGGCAGCTACTAATAGGCCGGACGTTCTTGATTCGGCACTGTTGAGGC 1299 |||| || || ||||| || |||||||| ||||| |||||||| || || || |||| | Sbjct 1336 GTGTCATTGTGTTGGCTGCCACTAATAGACCGGATGTTCTTGACTCCGCGTTGCTGAGAC 1395 Query 1300 CTGGAAGGTTTGATCGACAGGTTACGGTGGATAGGCCTGATGTGGCTGGCAGAG-TCAAG 1358 |||| || ||||| || || || || ||||||||||||||||| || || |||| || || Sbjct 1396 CTGGTAGATTTGACCGGCAAGTCACAGTGGATAGGCCTGATGTAGCCGGAAGAGTTC-AG 1454 Query 1359 ATTCTCCAGGTTCATTCTAGGGGGAAGGC-ACTCGGTAAAGATGTGGACTT-TGACAAGG 1416 || || |||| |||||||| || || || | | || || ||||| || || || || | Sbjct 1455 ATCCTTAAGGTGCATTCTAGAGGAAAAGCTA-TTGGGAAGGATGTTGA-TTACGAAAAAG 1512 Query 1417 TTGCGAGGAGGACCCCCGGTTTCACGGGTGCTGACTTACAAAACCTGATGAATGAAGCGG 1476 |||||||||| || || |||||||| |||||||| || || ||||||||||||||||| | Sbjct 1513 TTGCGAGGAGAACTCCGGGTTTCACTGGTGCTGATTTGCAGAACCTGATGAATGAAGCTG 1572 Query 1477 CGATTCTTGCAGCCAGGCGTGAGCTTAAGGAGATAAGCAAGGATGAAATCTCTGATGCTC 1536 |||||||||| || || |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1573 CGATTCTTGCTGCTAGACGTGAGCTTAAGGAGATAAGCAAGGATGAAATATCTGATGCTC 1632 Query 1537 TTGAGAGGATCATTGCTGGACCTGAGAAGAAGAATGCAGTTGTCTCTGATGAGAAGAAGA 1596 ||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| | Sbjct 1633 TTGAGAGGATCATTGCTGGACCTGAAAAGAAGAACGCTGTTGTCTCTGAGGAGAAGAAAA 1692 Query 1597 GACTTGTTGCATACCATGAGGCTGGCCATGCTCTAGTGGGTGCTCTTATGCCGGAATATG 1656 |||||||||| |||||||||||||| |||||| |||| ||||| ||||||||||| |||| Sbjct 1693 GACTTGTTGCTTACCATGAGGCTGGGCATGCTTTAGTTGGTGCACTTATGCCGGAGTATG 1752 Query 1657 ATCCGGTTGCAAAGATTTCCATCATTCCTCGTGGCCAAGCTGGTGGGCTCACtttttttG 1716 |||| || || ||||| || || ||||| ||||||||||||||||||||||| ||||| | Sbjct 1753 ATCCAGTGGCCAAGATATCGATTATTCCACGTGGCCAAGCTGGTGGGCTCACCTTTTTCG 1812 Query 1717 CTCCAAGCGAAGAAAGACTTGAGTCTGGATTGTACAGCAGGAGCTACCTCGAGAATCAAA 1776 |||| |||||||| || || ||||| |||||||| ||||| |||||||| ||||| |||| Sbjct 1813 CTCCTAGCGAAGAGAGGCTAGAGTCCGGATTGTATAGCAGAAGCTACCTTGAGAACCAAA 1872 Query 1777 TGGCTGTTGCACTTGGCGGAAGGGTTGCAGAGGAGGTGATCTTTGGGGATGAGAATGTGA 1836 |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct 1873 TGGCTGTTGCACTTGGTGGAAGGGTTGCAGAAGAGGTGATCTTTGGAGACGAGAATGTGA 1932 Query 1837 CGACCGGAGCATCAAATGATTTCATGCAGGTGTCTCGTGTGGCACGTCAAATGATTGAGA 1896 | |||||||||||||||||||||||||| ||||| || ||||| || |||||| |||||| Sbjct 1933 CAACCGGAGCATCAAATGATTTCATGCAAGTGTCGCGGGTGGCTCGCCAAATGGTTGAGA 1992 Query 1897 GATTTGGCTTCAGCAAAAAGATTGGACAAGTTGCTGTTGGTGGCCCTGGTGGAAATCCCT 1956 |||| || |||||||||||||||||||||||||| |||||||| | || ||||| |||| Sbjct 1993 GATTCGGGTTCAGCAAAAAGATTGGACAAGTTGCAGTTGGTGGAGCAGGAGGAAA-CCCT 2051 Query 1957 TTAT-GGGTCAACAA-ATGTCATCACAGAAAGATTACTCAATGGCAACTGCAGATATTGT 2014 || | ||||||| | |||||||| ||||| |||||||| |||||||| || ||| | || Sbjct 2052 TTCTTGGGTCAA-AGTATGTCATCGCAGAAGGATTACTCGATGGCAACAGCGGATGTGGT 2110 Query 2015 AGATGCTGAGGTGCGAGAGTTAGTTGAGAAGGCATACAAGAGAGC-AACGGAGATCATAA 2073 ||||| || ||| ||||| | ||||||||||| ||| |||||| || | ||||||||| Sbjct 2111 TGATGCGGAAGTGAGAGAGCTCGTTGAGAAGGCGTACGTGAGAGCGAAAG-AGATCATAA 2169 Query 2074 CAACTCATATTGATATCCTACACAAGCTTGCACAGCTCCTCATCGAGAAAGAAACTGTTG 2133 |||| || |||||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 2170 CAACACAAATTGATATCCTACACAAGCTTGCACAGCTCCTTATTGAGAAAGAAACTGTGG 2229 Query 2134 ACGGCGAAGAGTTCATGAGCCTCTTT-ATTGACGGCCAAGCTGAGTTGTATATATCTT 2190 | || |||||||||||||| || ||| |||||||| ||||| ||||| ||| | |||| Sbjct 2230 ATGGAGAAGAGTTCATGAGTCT-TTTCATTGACGGACAAGCCGAGTTATATGTTTCTT 2286 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112499421345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5