BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923473 Length=985 Score E Sequences producing significant alignments: (Bits) Value AT1G50300.1 | Symbols: TAF15 | TBP-associated factor 15 | chr1:... 1520 0.0 > AT1G50300.1 | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628555-18631946 REVERSE LENGTH=1488 Length=1488 Score = 1520 bits (823), Expect = 0.0 Identities = 886/916 (97%), Gaps = 5/916 (1%) Strand=Plus/Plus Query 47 TCCTACTAATGGATCAGTCTACGTTTCCAATCTCCCATTAGGAACTGACGAGAATATGTT 106 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 118 TCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTT 177 Query 107 GGCTGAGTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGCACTCCTAA 166 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 178 GGCTGACTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGTACTCCTAA 237 Query 167 GGTATGGCTGTACCGGGATAAAGAGACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 226 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 238 GGTATGGCTGTACCGGGATAAAGAAACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 297 Query 227 TGAGGATCCCCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 286 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TGAGGATCCGCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 357 Query 287 AAACACCATTGGAGTTTTTATGGCTGAGTCG-AGACATAAAAATGCTGGTGATGCAGTTG 345 |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| Sbjct 358 AAACACCATTGGAGTTTTTATGGCCGAGTCGAAGA-ATAAAAATGCTGGTGATGCAGTTG 416 Query 346 AGTTTGTTGAATTCGATGGAGGTGCTCAGGAAACAAATGAAGGTGCTGGAAGGGGTAGAG 405 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || | Sbjct 417 AGTTTGTTGAATTCGATGGAGGTGCTGAGGAAACAAATGGAGGTGCTGGAAGGGGGAGGG 476 Query 406 GTCAGGCTGATCCGTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCAAATA 465 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 477 GTCAGGCTGATTCTTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCTAATA 536 Query 466 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 596 Query 526 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGTGGTCGTGGAAGGGGTCGAGGTG 585 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 597 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGT---CGTGGAAGGGGTCGAGGTG 653 Query 586 GAGGCGCTGATGGTGGGGCACCTGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 645 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 654 GAGGCGCTGATGGTGGGGCCCCGGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 713 Query 646 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCTAAGCGTTTAAAAT 705 |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| Sbjct 714 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCGAAACGTCTAAAAT 773 Query 706 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGTCGTG 765 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 774 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGCCGTG 833 Query 766 GTGGTGGTTACAAGGAATTGGATGAACAAGAATTAGAGGAAACAAAGAGACGCAGGCGTG 825 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 834 GTGGTGGTTACAAGGAATTAGATGAACAAGAATTAGAGGAAACGAAGAGACGCAGGCGTG 893 Query 826 AGGCTGAAGAAGATGATGGCGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 885 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 894 AGGCTGAAGAAGATGATGGTGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 953 Query 886 GTGTTAAAACAAGCCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 945 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 GTGTTAAAACAAACCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 1013 Query 946 AAGTAGAGGAACTAGG 961 |||| ||||||||||| Sbjct 1014 AAGTCGAGGAACTAGG 1029 Score = 60.2 bits (32), Expect = 4e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1 TTTGATGAAATTGGATTACGATGGCTGGATAT 32 |||||||||||||||||||||||||||||||| Sbjct 87 TTTGATGAAATTGGATTACGATGGCTGGATAT 118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48224781120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5