BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923527

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50732.1 | Symbols:  | unknown protein. | chr1:18802688-1880...   562    9e-160


> AT1G50732.1 | Symbols:  | unknown protein. | chr1:18802688-18803363 
FORWARD LENGTH=550
Length=550

 Score =  562 bits (304),  Expect = 9e-160
 Identities = 356/381 (93%), Gaps = 3/381 (1%)
 Strand=Plus/Plus

Query  8    AAATTTAAGTCCGAAAAATGTGGTGTGCATGTTATCATCAGCCATTACTTGCTAGTTCCG  67
            ||||||  ||| |||||||||||||||| || |||||||||||||||| ||| |||||||
Sbjct  77   AAATTTGTGTCTGAAAAATGTGGTGTGCTTGCTATCATCAGCCATTACCTGCCAGTTCCG  136

Query  68   TCGTGTTGAATCGGCAGGCGAAGCAAAAAGAGAGTCTGAGAAGAAAACAAGTGTTCTTCT  127
            |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  137  TCGTGTTGAATCAGCAGGCGAAGCAAGAAGAGAGTCTGAGAAGAAAACAAGTGTTCTTCT  196

Query  128  TCATAT-C-C-TCATCTCCTTCAAGCTTAAGTGGCAAACATCAATCGCAAATCAGTAATT  184
            || ||| | | ||||||||||||||||||||   ||||||||||| ||||||||||||||
Sbjct  197  TCTTATCCTCATCATCTCCTTCAAGCTTAAGCACCAAACATCAATGGCAAATCAGTAATT  256

Query  185  ATCCTAAAAATGGGCTCAGACTAAAACCAAAGGCGAGTGTGTTGCCTCCTTCTGAGTCTG  244
            |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  257  ATCCTAAAAATGGGTTCAGACTAAAACCAAAAGCGAGTGTGTTGCCTCCTTCTGAGTCTG  316

Query  245  GTGATATCACTACCTTCCTCCTCGTTAGTGGAGCAATGATCTCCATGTATTTGGTAACCA  304
            ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  317  GTGATATCACTACATTCCTCTTTGTTAGTGGAGCAATGATCTCCATGTATTTGGTAACCA  376

Query  305  ATTTTCTGGTTCCATCGTTGCTTTTTAAGTCGCTCCAAGGTGAAGAAGAGGAAGAAGATG  364
            ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct  377  ATTTTCTGGTTCCATCGTTGCTTTTCAAGTCTCTCCAAGGTGAAGAAGAGGAAGAAGAGG  436

Query  365  AAGACTCCGATTAAACTATGA  385
            |||||||||||||||||||||
Sbjct  437  AAGACTCCGATTAAACTATGA  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18800138126


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5