BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923527 Length=398 Score E Sequences producing significant alignments: (Bits) Value AT1G50732.1 | Symbols: | unknown protein. | chr1:18802688-1880... 562 9e-160 > AT1G50732.1 | Symbols: | unknown protein. | chr1:18802688-18803363 FORWARD LENGTH=550 Length=550 Score = 562 bits (304), Expect = 9e-160 Identities = 356/381 (93%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 8 AAATTTAAGTCCGAAAAATGTGGTGTGCATGTTATCATCAGCCATTACTTGCTAGTTCCG 67 |||||| ||| |||||||||||||||| || |||||||||||||||| ||| ||||||| Sbjct 77 AAATTTGTGTCTGAAAAATGTGGTGTGCTTGCTATCATCAGCCATTACCTGCCAGTTCCG 136 Query 68 TCGTGTTGAATCGGCAGGCGAAGCAAAAAGAGAGTCTGAGAAGAAAACAAGTGTTCTTCT 127 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 137 TCGTGTTGAATCAGCAGGCGAAGCAAGAAGAGAGTCTGAGAAGAAAACAAGTGTTCTTCT 196 Query 128 TCATAT-C-C-TCATCTCCTTCAAGCTTAAGTGGCAAACATCAATCGCAAATCAGTAATT 184 || ||| | | |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 197 TCTTATCCTCATCATCTCCTTCAAGCTTAAGCACCAAACATCAATGGCAAATCAGTAATT 256 Query 185 ATCCTAAAAATGGGCTCAGACTAAAACCAAAGGCGAGTGTGTTGCCTCCTTCTGAGTCTG 244 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 257 ATCCTAAAAATGGGTTCAGACTAAAACCAAAAGCGAGTGTGTTGCCTCCTTCTGAGTCTG 316 Query 245 GTGATATCACTACCTTCCTCCTCGTTAGTGGAGCAATGATCTCCATGTATTTGGTAACCA 304 ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 317 GTGATATCACTACATTCCTCTTTGTTAGTGGAGCAATGATCTCCATGTATTTGGTAACCA 376 Query 305 ATTTTCTGGTTCCATCGTTGCTTTTTAAGTCGCTCCAAGGTGAAGAAGAGGAAGAAGATG 364 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 377 ATTTTCTGGTTCCATCGTTGCTTTTCAAGTCTCTCCAAGGTGAAGAAGAGGAAGAAGAGG 436 Query 365 AAGACTCCGATTAAACTATGA 385 ||||||||||||||||||||| Sbjct 437 AAGACTCCGATTAAACTATGA 457 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18800138126 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5