BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923615 Length=2045 Score E Sequences producing significant alignments: (Bits) Value AT1G51350.1 | Symbols: | ARM repeat superfamily protein | chr1... 3317 0.0 > AT1G51350.1 | Symbols: | ARM repeat superfamily protein | chr1:19035755-19039341 FORWARD LENGTH=2441 Length=2441 Score = 3317 bits (1796), Expect = 0.0 Identities = 1963/2046 (96%), Gaps = 2/2046 (0%) Strand=Plus/Plus Query 1 ACCGGAGAAACTAAATCTCCGCCATGCCTACCACCAcctcctccgcctcttcctcctcct 60 |||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||| Sbjct 74 ACCGGAGAAACTAAATCTCCGCCATGCCTACCACCACCACCTCCTCCGCTTCTTCCTCCT 133 Query 61 cctccgtctccGGTAACAATCGTCAAGCCGATGTATTCTCTCGTCTCGCTTCTTCTGACC 120 |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 134 CCTCTGCCTCCGGTAACAATCGTCAATCCGATGTATTCTCTCGTCTCGCTTCTTCTGACC 193 Query 121 CTGAAGTCAAGCTTAAGGCCCTTCGTGAGGTCAAAAACCAGATTATCGGAAATCGCACAA 180 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 194 CTGAAGTCAAGCTTAAGGCCCTTCGCGAGGTCAAAAACCAGATTATCGGAAATCGTACAA 253 Query 181 AAAAGCTCTCTTTCCTCAAACTCGGAGCTATTCCCGCCATAGCTTCTGTTCTCGCTGATG 240 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 AAAAGCTCTCTTTTCTCAAACTCGGAGCTATTCCCGCCATAGCTTCTGTTCTCGCTGATG 313 Query 241 CTGACGATTCTGATAAATGTAATAACATCCTCGTCCAATCTGCGGCGGCTCTTGGGAGTT 300 |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 314 CTGACGATTCTGATGAATGTAATAACATCCTCGTGCAATCTGCGGCGGCTCTTGGCAGTT 373 Query 301 TCGCTTGTGGGTTTGAAGCCGGAGTTCAAGCTGTTCTTGACGCCGGAGTTTTCCCTCATC 360 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 374 TCGCTTGTGGGTTTGAAGCCGGTGTTCAAGCTGTTCTTGACGCCGGCGTTTTCCCTCATC 433 Query 361 TTCTTCGTCTTCTTACTAATCCTGACGAAAAGGTAGTAGATGCAGGGGCTCGTTCGCTTA 420 ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 434 TTCTTCGTCTTCTCACTAATACTGACGAAAAGGTAGTAGATGCGGGGGCTCGTTCGCTTA 493 Query 421 GAATGATATTTCAATCTAATCAAGCTCCAAAGTATGATTTTCTTCAAGAGAAAAACATGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 GAATGATATTTCAATCTAATCAAGCTCCAAAGTATGATTTTCTTCAAGAGAAAAACATGG 553 Query 481 AGTTTCTTTTCTCGTTGTTGAATAGCGAGAATGAGAATGTTAGTGGGCTTGGTGCGAGCA 540 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 554 AGTTTCTTTTCTCGTTGTTGAATAGTGAGAATGAGAACGTTAGTGGGCTTGGTGCGAGTA 613 Query 541 TTATTGCTCATGCTTGTGGAACAAGTGTAGAGCAACGGGTTCTTTGTGAAGCTGGTGTCT 600 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 614 TTATCGCTCATGCTTGTGGAACAAGTGTAGAGCAACGGGTTCTCTGTGAAGCTGGTGTCT 673 Query 601 TGGAGAAGCTTGTTATCCTTCTTGATGGTTCGTTTA-GCCAAAGAGAAGCTTGTCTTGAA 659 ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 674 TGGAGAAGCTTGTTATCCTTCTTGATGGTTC-TTTAAGCCAAAGAGAAGCTTGTCTTGAA 732 Query 660 TCTTTAGCGACGGTTTTGAAGAATAATCCTGAAGCTGTTTCGGACTTTGTTGGACTTGAG 719 |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 733 TCTTTAGCTACGGTTTTGAAGAATAATCCTGAAGCTGTTTCTGATTTTGTTGGACTTGAG 792 Query 720 TCTGGGAAATATTTTAATTCCGTGACTGAGTTAACAAAGGATAGGTATCCGAGGACTAGG 779 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 793 TCTGGGAAGTATTTTAATTCTGTGACTGAGTTAACAAAGGATAGGTATCCGAGGACTAGG 852 Query 780 CTGCTTTCTTGTCTCTGCTTAGTTGTCATATACAACACTTCTCCGTCTTATTTCGTAAAC 839 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 853 CTGCTTTCTTGTCTTTGCTTAGTTGTCATATACAACACTTCTCCATCTTATTTCATAAAC 912 Query 840 ATGGGAACCAAATCAAGTTTGATAACTACTCTGCTTGAGCTTCTTAATGACCCTGGTCAA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 ATGGGAACCAAATCAAGTTTGATAACTACTCTGCTTGAGCTTCTTAATGACCCTGGTCAA 972 Query 900 TCTGGAGATGATGCTGCCTTGGGTTTATCTTGTCTTATTGCGGAAAAAGAGGATTTACAA 959 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 973 TCTGGAGATGATGCTGCCTTGGGTTTATCCTGTCTGATTGCGGAAAAAGAGGATTTACAA 1032 Query 960 CAGTTAGCTTACGAGGCTGATGCGATCAAGAATATTGTTGACATCTTGAAGACAGGTAGT 1019 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1033 CAGTTAGCTTACGAGGCCGATGCAATCAAGAATATTGTTGAGATCTTGAAGACAGGTAGT 1092 Query 1020 GAGCTCCAGCCTAGACGTCTTGAGGGTTTGTTTTTGTCTCTTGCTGAATTGTGCTCAAAG 1079 ||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 1093 GAGCTCCAGTCTAAACGTCTTCAGGGTTTGTTTTTGTCTCTAGCTGAATTGTGCTCAAAG 1152 Query 1080 CTGGAGGATTGCAGGTGTAGCTTCCTGTCATTGCAGGTGTTAGACCTGCTGACTAATGCG 1139 || ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 1153 CTAGAGGATTGCAGATGTAGCTTCCTGTCATTGCAGGTATTAGACCTGCTGACTGATGCG 1212 Query 1140 CTAAGACACAAAGATGCTGATGTAAGAGCTGCGGCGTGCATTTGCTTTAGAAACGCTGCT 1199 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1213 CTAAGACACAAAGATGCTGATGTAAGAGCTGCGGCATGCATTTGCTTTAGAAACGCTGCT 1272 Query 1200 CGATCAGTCAAGAGTTTGAGTGCAGGACGATTCAACAGCGATCATGCTATGCTTCCTTTG 1259 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1273 CGATCAGTCAAGAGTTTGAGTGCAGGACGATTCAACAGCGATCATGTTATGCTTCCTTTG 1332 Query 1260 GTTCAGTTATTGCATGATCCATCTTCCTCTGTCCAGGTTGCAGTTCTTGGCGCTCTGAGC 1319 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 1333 GTTCAGCTATTGCATGATCCATCTTCCTCTGTCCAGGTTGCAGTTCTTGGTGCTCTGAAC 1392 Query 1320 AATATAGTATTGGATTTTTCATCACCAAAGTCATCATTTATCGAGTATGGAGGGATAAAA 1379 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1393 AATATAGTAATGGATTTTTCATCACCGAAGTCATCATTTATCGAGTATGGAGGGATAAAA 1452 Query 1380 CAGCTTATTGAGTTGTCAAAATCAATGGATCTAAATGCTCGGTGTAGCGCTTTACGGGCT 1439 ||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||| Sbjct 1453 CAGCTTACTGAGTTGTCAAAATCAATGGATCCAAATACTCGGTGTAGCGCTTTGCGGGCT 1512 Query 1440 TTAAGGAACCTCATGTTCCTTGCCGACAATAAACGTAAAGAACTCTTTTATTCAGACGTC 1499 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1513 TTAAGGAACCTCATGTTCCTTGCCGACATTAAACGTAAAGAACTCTTTTATTCAGACGTT 1572 Query 1500 AAGGCTCAAGGATTTGCTTGCCTCATTAGTGATCCTGAGCCCCCAGTACAAGAGCAAGCT 1559 |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1573 AAGGCTCAAGGACTTGCTTGTCTCATTAGTGATCCTGAGCCCCCAGTGCAAGAGCAAGCT 1632 Query 1560 TTGGCCCTCCTCCGTAATCTTGTTGACGGATGTATCAGCTCAATCGAGTTTGTATTTGAT 1619 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1633 TTGGCCCTCCTCCGTAATCTTGTTGATGGATGTATCAGCTCTATCGAGTTTGTATTTGAT 1692 Query 1620 GAAGATGGTATTATCTTAGATACTGTTGGGAGGCAATTGAGAAAAGCTCCGCAAGCTCAA 1679 ||||||||| ||||||||||||||||||||||||||||||| |||||||| || || ||| Sbjct 1693 GAAGATGGTCTTATCTTAGATACTGTTGGGAGGCAATTGAGGAAAGCTCCACAGGCACAA 1752 Query 1680 ATGGCAATACAGGGAATGTATGTGCTCGCGAATGTAGCGAGTGGGACTGAGTTACATAAA 1739 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1753 ATGGCAATACAGGGAATGTATGTGCTCACGAATGTAGCGAGTGGGACTGAGTTACATAAA 1812 Query 1740 GAAGCAGTTATGCAGCAACTGTTTCCCCAAGCCAAAGCTGGATCAGAGAATTTCATGCTT 1799 ||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1813 GAAGCGGTTATGGAGCAACTGTTTCCTCAAGCTAAAGCTGGATCAGAGAATTTCATGCTT 1872 Query 1800 AAGTTTTTGCAGAGTGACGAGAGCCAGTTACGGTCAGCAACAGTCTGGACAATCATAAAC 1859 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1873 AAGTTTTTGCAGAGCGACGAGAGCCAGTTACGGTCAGCAGCAGTCTGGACAATCATAAAC 1932 Query 1860 CTCATTAGTCCTTCAAGTCCAGGTGCATTTGATCGGCATGTGAAATTACGGAATGCGGGT 1919 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1933 CTCATTAGTCCTTCAAGCCCCGGTGCATTTGATCGGCATGTGAAATTACGGAATGCGGGT 1992 Query 1920 ATCATTCCCCAGTTAAAAAACATGGTCAATGACGCTTGCCTCGATGTTAAGATTCGCATC 1979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1993 ATCATTCCCCAGTTAAAAAACATGGTCAATGACGCTTGCCTCGATGTTAAGATTCGCATC 2052 Query 1980 AGAACCGTATTAGGCCAGTCCATGTCTTTTGGCGATAATTACTAAACACAGAGACATTAC 2039 || || ||||||||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 2053 AGGACTGTATTAGGCCAGTCCATGTCTTTTGGCGATAATTACTAAACACAGCGATATTGC 2112 Query 2040 TTTTCC 2045 |||||| Sbjct 2113 TTTTCC 2118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101354900355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5