BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923620
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51390.1 | Symbols: NFU5, ATNFU1 | NFU domain protein 5 | ch... 1328 0.0
AT3G20970.1 | Symbols: NFU4, ATNFU2 | NFU domain protein 4 | ch... 673 0.0
> AT1G51390.1 | Symbols: NFU5, ATNFU1 | NFU domain protein 5 |
chr1:19050344-19052094 FORWARD LENGTH=1252
Length=1252
Score = 1328 bits (719), Expect = 0.0
Identities = 809/853 (95%), Gaps = 3/853 (0%)
Strand=Plus/Plus
Query 14 GAAGATCATGAAAGGGGTTACGAGACTTGTCAATTCTCTTTCGCGACATACAGCTTCTGT 73
|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 77 GAAGATCATGAAAGGGCTTACGAGGCTTCTCAATTCTCTTTCGCGACATACAGCTTCCGT 136
Query 74 AACTTGTTCT-C--CTTCTACTTCTCTTCTGATATCACGTCGCTCTCTGTTTATCTCGGC 130
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AACTTGTTCTCCATCTTCTTCTTCTCTTCTGATATCACGTCGCTCTCTGTTTATCTCGGC 196
Query 131 GGCGACGCACTTTCCGGCGAATTTATGGGATTCCAGAGCGACTAATGCTTCTCGCAACTC 190
|||||| |||||||||| |||||| | ||| || | | | |||||||||||||| ||||
Sbjct 197 GGCGACACACTTTCCGGTGAATTTCTCGGAGTCGATAACAACTAATGCTTCTCGTAACTG 256
Query 191 TGCGAGATCTTCTTCATTTCCCCTGAATTGGATCGAGCAAAGGAGGACAATGTTTATCGA 250
| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 257 TTCGAGATCTTCTTCATTTCCCTTCAATTGGATCGAGCAAAGGAGGACAATGTTTATCCA 316
Query 251 AACACAATCAACACCAAATCCTTCTTCTCTAATGTTTAATCCTGGTAAACCAGTTATGGA 310
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 317 AACACAATCAACACCAAACCCCTCTTCTCTAATGTTTAGTCCTGGTAAACCAGTTATGGA 376
Query 311 TATTGGAAGTGCTGATTTCCCTAATTCTCGTTCTGCTATGGGTTCACCTTTAGCTAAAGC 370
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 377 GATTGGAAGTGCTGACTTCCCTAATTCTCGCTCTGCTATGAGTTCACCTTTAGCTAAAGC 436
Query 371 CATCTTCGCCATTGATGGTGTAGTTCGAGTTTTCTTTGGGTCAGATTTTGTTACTGTAAC 430
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 437 CATTTTCGCCATTGATGGTGTAGTTCGAGTTTTCTATGGGTCAGATTTTGTTACTGTAAC 496
Query 431 AAAGTCAGATGATGTAACATGGGATATACTCAAGCCTGATATCTTTGCAGTGGTAATGGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AAAGTCAGATGATGTAACATGGGATATACTCAAGCCTGATATCTTTGCAGTGGTAATGGA 556
Query 491 CTTTTACTCTTCTGGTCAGCCTTTGTTTCTGGATTCACAAGCTACAGCTGCCAAGGATAC 550
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 557 CTTTTACTCTTCTGGTCAGCCTTTGTTTCTCGACTCACAAGCTACAGCTGCCAAGGATAC 616
Query 551 CGCCATTCACGAGGATGATTCTGAAACTGTAGCAATGATTAAGGAACTCTTGGAGACGCG 610
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CGCTATTCATGAGGATGACTCTGAAACTGTAGCAATGATTAAGGAACTCTTGGAGACGCG 676
Query 611 TATCCGACCATCGGTTCAAGATGATGGAGGGGACATCGAGTATTGTGGATTTGATACGGA 670
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 677 TATCCGACCATCAGTCCAAGATGATGGAGGGGACATCGAGTATTGTGGATTCGATACGGA 736
Query 671 AACTGGTATAGTTAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGT 730
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AACTGGTATAGTGAAGCTTAGAATGCAAGGAGCTTGTAGCGGTTGTCCAAGTTCATCTGT 796
Query 731 TACTTTGAAATCAGGAATTGAGAATATGCTTATGCATTATGTATCCGAGGTCAAAGGTGT 790
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 797 TACTTTGAAATCCGGAATTGAGAATATGCTTATGCATTATGTTTCCGAGGTCAAAGGTGT 856
Query 791 TGAGCAAGAATTCGATGGTGAAGAGGAGGGAACATCGTCTGGTCCAATGGAGTAGAGTAA 850
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 857 TGAGCAAGAATTCGATGGTGAAGAGGAGGGAACATCTTCTGGTCCAATGGAGTAGAGTAA 916
Query 851 CAGAAATGCATCA 863
|||||||||||||
Sbjct 917 CAGAAATGCATCA 929
> AT3G20970.1 | Symbols: NFU4, ATNFU2 | NFU domain protein 4 |
chr3:7348197-7350305 FORWARD LENGTH=1168
Length=1168
Score = 673 bits (364), Expect = 0.0
Identities = 547/634 (86%), Gaps = 18/634 (3%)
Strand=Plus/Plus
Query 227 GCAAAGGAGGACAATGTTTATCGAAACACAATCAACACCAAATCCTTCTTCTCTAATGTT 286
||| || || |||||||||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct 305 GCAGAGAAGAACAATGTTTATCCAAACCCAATCAACTCCAAATCCTTCTTCTCTCATGTT 364
Query 287 TAATCCTGGTAAACCAGTTATGGATA-TTGGAAGTGCTGATTTCCCTAAT-TCTCGTTCT 344
| ||||||| |||||||| ||||| | |||||||||||||||| |||||| | |||||||
Sbjct 365 TTATCCTGGCAAACCAGTCATGGA-AGTTGGAAGTGCTGATTTTCCTAATGT-TCGTTCT 422
Query 345 GCTATGGGTTCACCTTTAGCTAAAGCCATCTT-CGCCATTGATGGTGTAGTTCGAGTTTT 403
||| ||||||| || ||||| ||| | || || | |||||||||||||||||||||||||
Sbjct 423 GCTCTGGGTTCGCCATTAGCCAAATCTAT-TTACTCCATTGATGGTGTAGTTCGAGTTTT 481
Query 404 CTTTGGGTCAGATTTTGTTACTGTAACAAAGTCAGATGATGTAACATGGGATATACTCAA 463
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||
Sbjct 482 CTTTGGGTCAGATTTTGTCACTGTAACTAAGTCAGATGATGTATCATGGGATATTCTCAA 541
Query 464 GCCTGATATCTTTGCAGTGGTAATGGACTTT-TACTCTTCTGGTCAGCCTTTGTTTCTGG 522
|||||| || ||||||| || ||||| ||| || |||||||| |||||||||||||| |
Sbjct 542 GCCTGAGATATTTGCAGCAGTCATGGA-TTTCTATTCTTCTGGCCAGCCTTTGTTTCTCG 600
Query 523 ATTCACAAGCTACAGCTGCCAAGGATACCGCCATTCA-CGAGGATGATTCTGAAACTGTA 581
| ||||||||| | |||||||||||||| ||||| || ||||||||| |||||||| |||
Sbjct 601 ACTCACAAGCTGCTGCTGCCAAGGATACTGCCAT-CAGCGAGGATGACTCTGAAACAGTA 659
Query 582 GCAATGATTAAGGAACTCTTGGAGACGCGTATCCGACCATCGGTTCAAGATGATGGAGGG 641
|||||||| ||||||||||| || || || ||| ||||| | |||||||||||||| |||
Sbjct 660 GCAATGATCAAGGAACTCTTAGAAACACGCATCAGACCAGCAGTTCAAGATGATGGTGGG 719
Query 642 GACATCGAGTATTGTGGATTTGATACGGAAA-CTGGTATAGTTAAGCTTAGAATGCAAGG 700
||||| ||||||||||| |||||| |||||| | |||||||| ||||| || ||||||||
Sbjct 720 GACATTGAGTATTGTGGGTTTGATCCGGAAAGC-GGTATAGTGAAGCTGAGGATGCAAGG 778
Query 701 AGCTTGTAGCGGTTGTCCAAGTTCATCTGTTACTTTGAAATCAGGAATTGAGAATATGCT 760
||||||||| |||||||| || |||||||||||||||||||| ||||| || || |||||
Sbjct 779 AGCTTGTAGTGGTTGTCCGAGCTCATCTGTTACTTTGAAATCGGGAATCGAAAACATGCT 838
Query 761 TATGCATTATGTATCCGAGGTCAAAGGTGTTGAGCAAGAATTCGATGGTGAAGA-G--GA 817
|||||||||||||||||||| |||||||| || ||||| || ||||| ||||| | ||
Sbjct 839 GATGCATTATGTATCCGAGGTGAAAGGTGTAGAACAAGAGTTTGATGGGGAAGATGAAGA 898
Query 818 GGGAACATCGTCTGGTCCA-ATG-GAGTAGAGTA 849
|||||| | |||||| | ||| ||||||||||
Sbjct 899 GGGAACGTTGTCTGGAG-AGATGAGAGTAGAGTA 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5