BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923621
Length=372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51400.1 | Symbols: | Photosystem II 5 kD protein | chr1:19... 562 8e-160
AT1G51402.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 484 2e-136
> AT1G51400.1 | Symbols: | Photosystem II 5 kD protein | chr1:19052023-19052582
REVERSE LENGTH=560
Length=560
Score = 562 bits (304), Expect = 8e-160
Identities = 348/369 (94%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 1 CACACGTGGGAATCCAACTTACCAATTGCAATGGCGTCAATGACCATGACATCTTCATTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACACGTGGGAATCCAACTTACCAATTGCAATGGCGTCAATGACCATGACATCTTCATTT 120
Query 61 CTCCCCACCGTCTCAAAGCTTCCGGCAAACATATCCGGCAACAGCAGACGAAGCCTCACG 120
||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 121 CTCCCTACCGTCTCAAACCTTCCGGCAAACATCTCCAGCAACAGCAGACGAAGCCTCACG 180
Query 121 GTGGTCAAAGCCTCCGCGAGCGAAAACACAACCAGCTTGGAGAACAAGAAACAAGAACAG 180
|||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GTGGTCAAAGCCTCCGGGAGTGAAAACACAACCAGCTTGGAGAACAAGAAGCAAGAACAG 240
Query 181 AGCATGAAGATGAGGAGGGATCTGGTGTTCACAGCTGCAGCTGCGGCTGTGTGCTCCTTA 240
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 241 AGCATGAAGATGAGGAGGGATCTTGTCTTCACAGCTGCAGCTGCAGCTGTGTGCTCCTTA 300
Query 241 GCTAAGGTGGCAATGGCAGACGAGGAACCAAAGAGAGGAACAGAGGCTGCCAAGAAGAAG 300
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 301 GCTAAGGTGGCAATGGCAGACGATGAGCCAAAGAGAGGAACAGAAGCTGCCAAGAAGAAG 360
Query 301 TACGCTCCTGTCTGTGTCACAATGCCTACGGC-AAGGATATGCCGTAACTGAGTTCGCTA 359
|| ||||| |||||||||||||||||||| || ||| |||||||||||||||||| ||||
Sbjct 361 TATGCTCCAGTCTGTGTCACAATGCCTACCGCCAAG-ATATGCCGTAACTGAGTTTGCTA 419
Query 360 TCTTA-CCA 367
| ||| |||
Sbjct 420 T-TTAACCA 427
> AT1G51402.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19052193-19053534
FORWARD LENGTH=500
Length=500
Score = 484 bits (262), Expect = 2e-136
Identities = 292/307 (95%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 23 CAATTGCAATGGCGTCAATGACCATGACATCTTCATTTCTCCCCACCGTCTCAAAGCTTC 82
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 308 CAATTGCAATGGCGTCAATGACCATGACATCTTCATTTCTCCCTACCGTCTCAAACCTTC 249
Query 83 CGGCAAACATATCCGGCAACAGCAGACGAAGCCTCACGGTGGTCAAAGCCTCCGCGAGCG 142
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 248 CGGCAAACATCTCCAGCAACAGCAGACGAAGCCTCACGGTGGTCAAAGCCTCCGGGAGTG 189
Query 143 AAAACACAACCAGCTTGGAGAACAAGAAACAAGAACAGAGCATGAAGATGAGGAGGGATC 202
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 188 AAAACACAACCAGCTTGGAGAACAAGAAGCAAGAACAGAGCATGAAGATGAGGAGGGATC 129
Query 203 TGGTGTTCACAGCTGCAGCTGCGGCTGTGTGCTCCTTAGCTAAGGTGGCAATGGCAGACG 262
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 128 TTGTCTTCACAGCTGCAGCTGCAGCTGTGTGCTCCTTAGCTAAGGTGGCAATGGCAGACG 69
Query 263 AGGAACCAAAGAGAGGAACAGAGGCTGCCAAGAAGAAGTACGCTCCTGTCTGTGTCACAA 322
| || ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 68 ATGAGCCAAAGAGAGGAACAGAAGCTGCCAAGAAGAAGTATGCTCCAGTCTGTGTCACAA 9
Query 323 TGCCTAC 329
|||||||
Sbjct 8 TGCCTAC 2
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17493176652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5