BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923648
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51600.1 | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1... 1443 0.0
> AT1G51600.1 | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1:19132221-19135541
FORWARD LENGTH=1665
Length=1665
Score = 1443 bits (781), Expect = 0.0
Identities = 884/934 (95%), Gaps = 6/934 (1%)
Strand=Plus/Plus
Query 1 GTAAATTGATGAATAGCAACCATGGATGACCTACATGGAAGCAATTCTCGAATGCAACAC 60
||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 447 GTAGATTGATGAAAAGCAACCATGGATGACCTACATGGAAGCAATGCTCGAATG---CAC 503
Query 61 ATTGGAGAAGCTCAAGATCCAATGCATGTGCAATATGAACATCATGCTTTGCACCACATC 120
||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 504 ATTAGAGAAGCTCAAGATCCAATGCATGTGCAATTTGAACATCATGCTTTGCATCACATC 563
Query 121 CACAATGGAAGCGGTATGGTTGATGATCATGCTGATGATGGCAATGCTGGTGGGATGAGT 180
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 564 CACAATGGAAGCGGTATGGTTGATGACCAGGCTGATGATGGCAATGCTGGTGGGATGAGT 623
Query 181 GAGGGAGTGGAAACAGACATTCCTTCTCACCCTGGAAATATAACTGACAATCGTGGTGAA 240
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 624 GAGGGTGTGGAAACAGACATTCCTTCTCACCCTGGAAATGTAACTGACAATCGTGGTGAA 683
Query 241 GTGGTTGACCGTGGTAGTGAACAAGGAGATCAGTTGACATTGTCGTTTCAGGGCCAAGTC 300
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 684 GTGGTCGACCGTGGTAGTGAACAAGGAGATCAGTTAACATTGTCTTTTCAGGGCCAAGTC 743
Query 301 TACGTTTTTGACAGTGTCTTGCCTGAAAAGGTTCAAGCTGTGCTCCTATTATTGGGTGGA 360
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 744 TACGTTTTTGACAGTGTCTTGCCTGAGAAGGTTCAAGCTGTGCTTCTATTATTGGGTGGT 803
Query 361 CGTGAATTACCTCAGGCAGCCCCTCCCGGCCTAGGATCACCTCATCAGAACAATAGAATA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 804 CGTGAATTACCTCAGGCAGCCCCTCCTGGCCTAGGATCACCTCATCAGAACAACAGAGTA 863
Query 421 TCGAGCTTACCTGGTACTCCTCAAAGGTTTAGTATTCCACAGCGGTTAGCCTCTTTGGTC 480
||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 864 TCGAGTTTACCTGGTACTCCTCAAAGGTTTAGTATTCCGCAGCGATTAGCTTCTTTGGTC 923
Query 481 AGATTTCGGGAGAAACGGAAAGGGAGGAATTTTGATAAGAAGATTCGGTATACAGTTCGC 540
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 924 AGATTTCGAGAGAAACGGAAAGGAAGGAATTTTGATAAGAAGATTCGGTATACAGTCCGC 983
Query 541 AAGGAGGTGGCTTTGAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAAC 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AAGGAGGTAGCTTTGAGGATGCAACGCAATAAAGGTCAGTTCACATCTGCCAAGTCAAAC 1043
Query 601 AATGACGAAGTTGCATCTGCTGGATCTAGCTGGGGGTCGAATCAAACCTGGGCTATAGAA 660
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1044 AATGATGAAGCTGCATCTGCTGGATCTAGCTGGGGGTCGAATCAAACCTGGGCCATAGAA 1103
Query 661 GGTAGCGAGGCTCAGCATCAAGAGATCTCATGTCGACACTGTGGAATCGGTGAGAAGTCA 720
|||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1104 AGTAGTGAGGCTCAGCATCAAGAGATCTCATGTCGGCACTGTGGAATTGGCGAGAAGTCA 1163
Query 721 ACTCCAATGATGAGGCGTGGACCTGCAGGGCCAAGAACACTTTGCAATGCATGTGGACTT 780
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1164 ACTCCAATGATGCGACGTGGACCTGCCGGGCCAAGAACACTTTGCAATGCATGTGGACTT 1223
Query 781 ATGTGGGCAAACAAGGGTGCTCTTAGGGACTTATCCAAAGCCTCTCCTCAAACAGCACAA 840
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1224 ATGTGGGCAAACAAGGGTGCTTTTAGGGACTTATCCAAAGCCTCTCCTCAAACAGCCCAG 1283
Query 841 AATCTTCCTTTAAATAAGAATGAGGATGCAAATCTCGAGACTGATCA--AA-TGATGATA 897
||||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||
Sbjct 1284 AATCTTCCTTTAAATAAGAATGAAGATGCAAATCTTGAGACTGATCATCAAATAATGATA 1343
Query 898 ACAGTGGCCAATGACATAAGCAACTCACAGTGAG 931
||||||||||||||||||||||||||||||||||
Sbjct 1344 ACAGTGGCCAATGACATAAGCAACTCACAGTGAG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5