BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923776 Length=439 Score E Sequences producing significant alignments: (Bits) Value AT1G52550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 592 1e-168 > AT1G52550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15780.1); Has 53 Blast hits to 51 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 23; Viruses - 8; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:19572927-19574030 REVERSE LENGTH=685 Length=685 Score = 592 bits (320), Expect = 1e-168 Identities = 401/440 (91%), Gaps = 5/440 (1%) Strand=Plus/Plus Query 4 aaaaaaTCTTGTGAAGAAAATGGCGACAACGTTTTCCAACACGGGTTCAAGCTCCAACCT 63 |||| | |||||||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 13 AAAATACCTTGTGAAGAAAATGGCGACGGCGTTTGCCAACACGACTTCAAGCTCCAACCT 72 Query 64 TTACCTCCATCGCTGCCGTCAAAACCATTCTCTTCCATCTCCGTCGCGCTTTTCACCGTT 123 ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 73 TTACCTCCATCGCTGCCGTAAAAACCATCCTCTTCCATCTCCGTCGTTCTTTTCACCGTT 132 Query 124 CCGGTCGTCTCGGCTTCATCCTCAGACCCTCTTCCTCGTCGCAACTCC-CGACCGCGTAC 182 ||||||||||| |||| | |||||||||| ||||||||| | ||||| ||| |||| Sbjct 133 CCGGTCGTCTCCACTTCCTTCTCAGACCCTTTTCCTCGTCCCCACTCCAAAACC-TGTAC 191 Query 183 GACGCATCGCCGTCGCTCCTCTCGGCCCTCCAACACCGCCTACTCCCGACCCACCTCCAC 242 |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| | Sbjct 192 GACGCATCGCGGTCGCTCCTCTCGGCCCTCCAACGCCGCCTAGTCCCGACCCACCTCCGC 251 Query 243 CTAAAAACACGACTGAGCTCACAAGTATTGTGGGACTAGCATCGATGATTCAAGACCGTG 302 |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||| Sbjct 252 CTAAAAACACGACTGAGCTCACAAGTCTTGTGGGAGTAGCGTCGATGATTCAAGACCGTG 311 Query 303 TAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTCTGGGCTTCAGCATTAC 362 ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 312 TAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTTTGGGCTTCGGCTTTAC 371 Query 363 AAGGAAGAGGCA--AA-GGAAATGGTAAAGGGAAGAAGGGTTCACGATTCAAATAGTATT 419 |||||||||||| || || |||||||||||||||||||||||||| ||||||||||||| Sbjct 372 AAGGAAGAGGCAGCAAAGGTAATGGTAAAGGGAAGAAGGGTTCACGCTTCAAATAGTATT 431 Query 420 AGTTAGGTTGGTGTGGTGAT 439 |||||| ||||||||||||| Sbjct 432 AGTTAGATTGGTGTGGTGAT 451 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20861115835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5