BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923776

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   592    1e-168


> AT1G52550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; 
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G15780.1); 
Has 53 Blast hits to 51 proteins in 18 species: Archae - 0; 
Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 23; Viruses 
- 8; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:19572927-19574030 
REVERSE LENGTH=685
Length=685

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 401/440 (91%), Gaps = 5/440 (1%)
 Strand=Plus/Plus

Query  4    aaaaaaTCTTGTGAAGAAAATGGCGACAACGTTTTCCAACACGGGTTCAAGCTCCAACCT  63
            |||| | ||||||||||||||||||||  ||||| ||||||||  |||||||||||||||
Sbjct  13   AAAATACCTTGTGAAGAAAATGGCGACGGCGTTTGCCAACACGACTTCAAGCTCCAACCT  72

Query  64   TTACCTCCATCGCTGCCGTCAAAACCATTCTCTTCCATCTCCGTCGCGCTTTTCACCGTT  123
            ||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||
Sbjct  73   TTACCTCCATCGCTGCCGTAAAAACCATCCTCTTCCATCTCCGTCGTTCTTTTCACCGTT  132

Query  124  CCGGTCGTCTCGGCTTCATCCTCAGACCCTCTTCCTCGTCGCAACTCC-CGACCGCGTAC  182
            |||||||||||  |||| | |||||||||| ||||||||| | |||||   |||  ||||
Sbjct  133  CCGGTCGTCTCCACTTCCTTCTCAGACCCTTTTCCTCGTCCCCACTCCAAAACC-TGTAC  191

Query  183  GACGCATCGCCGTCGCTCCTCTCGGCCCTCCAACACCGCCTACTCCCGACCCACCTCCAC  242
            |||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct  192  GACGCATCGCGGTCGCTCCTCTCGGCCCTCCAACGCCGCCTAGTCCCGACCCACCTCCGC  251

Query  243  CTAAAAACACGACTGAGCTCACAAGTATTGTGGGACTAGCATCGATGATTCAAGACCGTG  302
            |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||
Sbjct  252  CTAAAAACACGACTGAGCTCACAAGTCTTGTGGGAGTAGCGTCGATGATTCAAGACCGTG  311

Query  303  TAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTCTGGGCTTCAGCATTAC  362
            ||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct  312  TAAAGATCTTTCTTTCAGTACTAATTTGGATCTCTCTCTTCTTTTGGGCTTCGGCTTTAC  371

Query  363  AAGGAAGAGGCA--AA-GGAAATGGTAAAGGGAAGAAGGGTTCACGATTCAAATAGTATT  419
            ||||||||||||  || || |||||||||||||||||||||||||| |||||||||||||
Sbjct  372  AAGGAAGAGGCAGCAAAGGTAATGGTAAAGGGAAGAAGGGTTCACGCTTCAAATAGTATT  431

Query  420  AGTTAGGTTGGTGTGGTGAT  439
            |||||| |||||||||||||
Sbjct  432  AGTTAGATTGGTGTGGTGAT  451



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5