BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg923802

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52720.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   532    7e-151


> AT1G52720.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G15630.1); 
Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19640899-19641665 
FORWARD LENGTH=767
Length=767

 Score =  532 bits (288),  Expect = 7e-151
 Identities = 371/409 (91%), Gaps = 14/409 (3%)
 Strand=Plus/Plus

Query  1    TCTATCTACATTTTCACTTTCAATGGCTTTGATTATCTCCTGCTCCGCTCTAACCACGAT  60
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct  87   TCTATCTACATTTTCACTTTCAATGGCTTTGATTATCACCTGCTCCGCTCTACCCACGAT  146

Query  61   CCGAGCATCTTCCGGATCCGGATCCCTTAAGCCGGGTCCGAATCGCAAGAAATCTTCTTC  120
            |||||||||||||||||||||||||||||| |||| ||  || || ||||||||| || |
Sbjct  147  CCGAGCATCTTCCGGATCCGGATCCCTTAACCCGGATCAAAACCGTAAGAAATCTGCTGC  206

Query  121  TTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGATCCCA-ATTACCTCAACATCGAAAGCT  179
            |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct  207  TTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGAT-CCAGATTACCTCAACATCGAAAGCT  265

Query  180  CAGGCTCCGCCGTGAATCCGGAATCGAATCCGGGTAAACCCGATATTTCCGGGTCGGGTC  239
            || ||||| |||||||||||| ||   |       ||| |||||||||||||||||||||
Sbjct  266  CATGCTCCACCGTGAATCCGG-AT---A-------AAA-CCGATATTTCCGGGTCGGGTC  313

Query  240  AGAAGTTTCGTCGCGGTTGTCTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACAG  299
            | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  314  AAAAGTTTCGTCGCGGTTGTTTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACCG  373

Query  300  CAGAAGCTTCCACGTTCCACGATGTTATGTATCATTCCGCCATAGCTTCTCGACTTGCAT  359
            ||||||||||||||||||| || || |||||||| |||||||| |||||||||||||| |
Sbjct  374  CAGAAGCTTCCACGTTCCATGACGTAATGTATCACTCCGCCATTGCTTCTCGACTTGCGT  433

Query  360  CTGATCTCTCCGGCCGGGTCGAGGATTGAAACGGATTCGGGTCAGATCT  408
            ||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct  434  CTGATATCACCGGCCGAGTCGAGGATTGAAACGGATTCGGGTCAGATCT  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5