BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923802 Length=408 Score E Sequences producing significant alignments: (Bits) Value AT1G52720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 532 7e-151 > AT1G52720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19640899-19641665 FORWARD LENGTH=767 Length=767 Score = 532 bits (288), Expect = 7e-151 Identities = 371/409 (91%), Gaps = 14/409 (3%) Strand=Plus/Plus Query 1 TCTATCTACATTTTCACTTTCAATGGCTTTGATTATCTCCTGCTCCGCTCTAACCACGAT 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 87 TCTATCTACATTTTCACTTTCAATGGCTTTGATTATCACCTGCTCCGCTCTACCCACGAT 146 Query 61 CCGAGCATCTTCCGGATCCGGATCCCTTAAGCCGGGTCCGAATCGCAAGAAATCTTCTTC 120 |||||||||||||||||||||||||||||| |||| || || || ||||||||| || | Sbjct 147 CCGAGCATCTTCCGGATCCGGATCCCTTAACCCGGATCAAAACCGTAAGAAATCTGCTGC 206 Query 121 TTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGATCCCA-ATTACCTCAACATCGAAAGCT 179 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 207 TTGGTGGGCTCCTCTCTTCGGTTTACCCTCCGAT-CCAGATTACCTCAACATCGAAAGCT 265 Query 180 CAGGCTCCGCCGTGAATCCGGAATCGAATCCGGGTAAACCCGATATTTCCGGGTCGGGTC 239 || ||||| |||||||||||| || | ||| ||||||||||||||||||||| Sbjct 266 CATGCTCCACCGTGAATCCGG-AT---A-------AAA-CCGATATTTCCGGGTCGGGTC 313 Query 240 AGAAGTTTCGTCGCGGTTGTCTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACAG 299 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 314 AAAAGTTTCGTCGCGGTTGTTTTACGGAGGAGAAAGCTAAGCAGTTGAGGAGGAAAACCG 373 Query 300 CAGAAGCTTCCACGTTCCACGATGTTATGTATCATTCCGCCATAGCTTCTCGACTTGCAT 359 ||||||||||||||||||| || || |||||||| |||||||| |||||||||||||| | Sbjct 374 CAGAAGCTTCCACGTTCCATGACGTAATGTATCACTCCGCCATTGCTTCTCGACTTGCGT 433 Query 360 CTGATCTCTCCGGCCGGGTCGAGGATTGAAACGGATTCGGGTCAGATCT 408 ||||| || ||||||| |||||||||||||||||||||||||||||||| Sbjct 434 CTGATATCACCGGCCGAGTCGAGGATTGAAACGGATTCGGGTCAGATCT 482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19302815616 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5