BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923840 Length=1678 Score E Sequences producing significant alignments: (Bits) Value AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 2567 0.0 AT1G53020.1 | Symbols: UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATI... 1295 0.0 AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family p... 621 6e-177 > AT1G53025.1 | Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19756824-19759623 REVERSE LENGTH=2029 Length=2029 Score = 2567 bits (1390), Expect = 0.0 Identities = 1591/1686 (94%), Gaps = 22/1686 (1%) Strand=Plus/Plus Query 1 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 AAACTTTGGGAATTTCGTCAATGGAGCCTGACGTGGTGGAGATCCCTCCTCCTCCTCTGA 189 Query 61 TCGCTTCGGGCTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 TCGCTTCGGGTTCTAGAACTCGTAAACCCAGAAAGGCTGTTCCTGAAGTGATTGATGTGG 249 Query 121 AAAATTATGAATTCCGGAATGTTGGTGGTCTTAATGGTGGTAACAATGTTGTTGATAAGA 180 ||| |||||||||||| |||||||||| | |||| | | |||||||||||||||||||| Sbjct 250 AAAGTTATGAATTCCGCAATGTTGGTGTTGTTAA--G-GATAACAATGTTGTTGATAAGA 306 Query 181 AGAACAAAGGGAAGGCAATACAAGTTGACTGCTTTTCTTACAACAACGTTCAATCTCATC 240 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 307 AGAACAAAGGGAAGGCAATACAAGTTGACTCCTTTTCTTTCAACAACGTTCAATCTCATC 366 Query 241 ATCCTGGATCTTCGCCGATTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 300 ||| |||||| |||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 367 ATCATGGATCGTCGCTGCTTAACTTAGAGACGTTCCAAGACTATTATGGTCATAAGAATA 426 Query 301 ACCCTTTTAGTCAATTTTCTAATCAACCAATTGATGTTGATGACTACACAATGTTTCAAG 360 |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||| Sbjct 427 TCCCTTTTAGTGAATTTGCTAATCAACCAATTGATGTTGATGACTACTCAATGTATCAAG 486 Query 361 ACGTTCTAGATCCTAAGAATGTCCCAGCCGGTGCAGAGGTGACGACAGTACCTTGGGGTT 420 ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||| Sbjct 487 ACGTTCTAGATCCTAAGGATGTTCCAGCTGGTGCAGAGGTGACG---GTACCTTGGGGTT 543 Query 421 TAAATTCGAGCAGTAAGGGAACAGCGAAATCAAGTAGAAGCAGTT-TGAGAAGTCAATCG 479 |||||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||| Sbjct 544 TAAATTCGAGCAGTAAGGGAACTGCGAAATCAAGTATAAGCA-TTATGAGAAGTCAATCC 602 Query 480 ATGAAA-GAGTATGGAAC-CTCATCTCTGGCAACTACTCATGTTCCTCAATTATGGGATT 537 |||||| || |||||||| | |||||||||||| ||| ||||||||||||||||||||| Sbjct 603 ATGAAAGGA-TATGGAACAGT-ATCTCTGGCAACGACTAATGTTCCTCAATTATGGGATT 660 Query 538 ATTCTTTGCCTCAACAGAATCAGCCTATCTATTCTTCTGTATCGTTTTCTGTGGTTCAAC 597 || |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 661 ATACTTTGCCTCAGCAGAATCAGGCTATCTATTCTTCTGTATCGTTTTCTGCGGTTCAAC 720 Query 598 CTCAGACTCCTGATGTATTGATGGTC-CCGAATCCTACTCCAAACCCTTTTAGATT-TGA 655 ||||||||||||||||| |||||||| || ||||||||||||||||||||||| || ||| Sbjct 721 CTCAGACTCCTGATGTAGTGATGGTCACC-AATCCTACTCCAAACCCTTTTAG-TTATGA 778 Query 656 TGCTTCTGCTAGTTCTTCTCGCCCTATAGCGGCTGGGCCTATTTCTTCAGTCCAGGATTC 715 |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| Sbjct 779 TGCTTCTGCTAGTTCTTCTCATCCTATAGCGGCTGAGCCTATTTCTTCAGTTCAGGATTC 838 Query 716 TTCCAATGTC-AGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACTG 774 |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 839 TTCCAATG-CTAGGAAACTTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACACCG 897 Query 775 TTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACTCCA 834 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 898 TCGAGGATTTCTCAGATCATCACTATGCTTCAAAGGGTAAATCTTCAAAGCAGCACTCGA 957 Query 835 AGAATTGGGTGAAAAAGGTGCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 894 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 958 AGAATTGGGTGAAAAAGGTTCAAGCAGATTGGAAGATTCTTGAGAATGATTTGCCAGAGG 1017 Query 895 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 CAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGGAG 1077 Query 955 CCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACCT 1014 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1078 CTGAGGGAACTCCTTACCATGACGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATACTT 1137 Query 1015 ATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCCGAATC 1074 |||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 1138 ATCCTTCAGTGCCACCGAATGTTCATTACCATTCTGGTGGGCTTAGAATCAACCCGAATC 1197 Query 1075 TATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCCGGCAGTGCTAGGG 1134 ||||||||||||| |||||||||||||||||||||||||||||||| || || || |||| Sbjct 1198 TATACAATTGTGGGAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCAGGTAGCGCGAGGG 1257 Query 1135 AGAAATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1194 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 AGAAATGGCTCCCAAATGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACTCA 1317 Query 1195 TCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGGACTGCAT 1254 |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1318 TCTTGAATGAAAAACCATACTTTAACGAACCTGGCTACGTACAGAGCGCGGGGACTGCAT 1377 Query 1255 CAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTTAAAGACTA 1314 ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1378 CAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTTAAAGACTA 1437 Query 1315 TGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTTCT 1374 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1438 TGGTTTACAGCATAAGAAGACCACCCCAGCATTTTGAAGAGTATGTTCAAAACCATTACT 1497 Query 1375 TCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1434 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1498 TTGTCCGGTCTCACGACATTGTGAAAGCATGCAATGCTTATAAAGCTGGAGCTCCGCTTG 1557 Query 1435 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGGCTCCAAGA 1494 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1558 GATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAAGAAGCTAGACAGAGCGGCTCCAAGA 1617 Query 1495 AGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGTCAAACTAG 1554 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1618 AGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGTCAAACTAG 1677 Query 1555 GAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGA-GAGCAGTGCTAACACAGAGAAT 1613 |||||||||||||||||||||||||| |||| ||| | ||||| |||||||||||||||| Sbjct 1678 GAGTCAAGGAGCTTGCAGAAAAACCAGAACCGCCT-ATGAGCAATGCTAACACAGAGAAT 1736 Query 1614 CAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1672 |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1737 CAGAGCAAGAAAA-AAACCCGTAAGAGAAGCAGATCATCGAGGTGAGCCAAATCCACCAA 1795 Query 1673 ATGTTT 1678 |||||| Sbjct 1796 ATGTTT 1801 > AT1G53020.1 | Symbols: UBC26, PFU3 | UBC26 (UBIQUITIN-CONJUGATING ENZYME 26); ubiquitin-protein ligase | chr1:19751372-19753064 REVERSE LENGTH=1182 Length=1182 Score = 1295 bits (701), Expect = 0.0 Identities = 871/953 (91%), Gaps = 12/953 (1%) Strand=Plus/Plus Query 712 ATTCTTCCAATGTCAGGAAAATTAAGGAAGAGTTTCTGAGGGATTTTAAAAGATTTGACA 771 ||||||||| ||| | |||| ||||||||||||||||| | | ||||||||||||||| Sbjct 236 ATTCTTCCAGTGTTAAGAAACTTAAGGAAGAGTTTCTGCGCAACTTTAAAAGATTTGACT 295 Query 772 CTGTTGAGGATTTCTCAGATCATCACTATGCTTCTAAGGGTAAATCTTCAAAGCAGCACT 831 | |||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||| Sbjct 296 CCGTTGAGGATTTCTCAGATCATCACTATGTTTCTAAGGGGAAAGCGTCAAAGCAGCACT 355 Query 832 CCAAGAATTGGGTGAAAAAGGTGCAAGCA-GATTGGAAGATTCTTGAGAATG-ATTTGCC 889 | |||||||||||||||||||| |||| | || ||||| |||||| | | | ||||||| Sbjct 356 CGAAGAATTGGGTGAAAAAGGTTCAAG-ACGAGTGGAAAATTCTTAACCA-GAATTTGCC 413 Query 890 AGAGGCAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTAT 949 |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 414 AGAGACAATATTTGTCAGAGCCTGCGAATCAAGAATGGATCTTTTGAGAGCTGTAATTAT 473 Query 950 TGGAGCCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGA 1009 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 474 TGGAGCCGAGGGAACTCCTTACCATGACGGTCTTTTCTTTTTCGATATTCAGTTCCCAGA 533 Query 1010 TACCTATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCC 1069 ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 534 TACCTATCCTTCAGTGCCACCAAATGTTTATTACCATTCCGGTGGGCTTAGAATCAACCC 593 Query 1070 GAATCTATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGC-CGGCAGTG 1128 |||||||||||| |||||||| ||||||||||||||||||||||||| ||| || | | Sbjct 594 GAATCTATACAACTGTGGTAAGGTATGCTTGAGTCTTCTCGGTACCT-GGCATGGTAACG 652 Query 1129 CTAGGGAGAA-ATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAA 1187 | ||| | || ||||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 653 CGAGGCA-AAGCTGGCTCCCAAAGGAGTCCACAATGTTACAGGTTCTTGTCTCAATACAA 711 Query 1188 GCACTCATCTTGAATGAAAAACCATACTTTAACGAGCCTGGCTACGTACAGAGCATGGGG 1247 ||||| ||||||||||| |||||||||||||||| |||||||||| | || || |||| Sbjct 712 GCACTTGTCTTGAATGAACAACCATACTTTAACGAACCTGGCTACGGCCTGATCAAGGGG 771 Query 1248 AC-TGCATCAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTT 1306 || || | |||||||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 772 ACTTG-GTTAGGCGAGTCCAAGTCTAAAGTTTACAGTGAGAACGTATTTCTATTGTCGTT 830 Query 1307 AAAGACTATGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAA 1366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 AAAGACTATGGTTTACAGCATGAGAAAACCACCCCAGCATTTTGAAGAGTATGTTCAAAA 890 Query 1367 CCATTTCTTCGTCCGGTCTCACGACATTGTGAAAGCGTGCAATGCTTATAAAGCTGGAGC 1426 ||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 891 CCATTACTTTGTCCGGTCTCACGACATCGTGAAAGCATGCAATGCTTATAAAGCTGGCGC 950 Query 1427 TCCGCTTGGATCGATGGTTAAAGGCGGAGTCCAAGACCTTGAACAAGCTAGCCAGAGCGG 1486 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 951 TCCGCTTGGATCGATGGTTAAAGGAGGAGTCCAAGACCTTGAACAAGCTAGACAGAGCGG 1010 Query 1487 CTCCAAGAAGTTTAAGACCGATGTAGCTCGCTTTATGCAGACAGTTGTTGATGAATTCGT 1546 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1011 CTCCAAGAAGTTTAAGACCGATGTAGCTAGCTTTATGCAGACAGTGGTTGATGAATTCGT 1070 Query 1547 CAAACTAGGAGTCAAGGAGCTTGCAGAAAAACCAAAACCACCTGAGAGCAGTGCTAACAC 1606 |||||||||||||||||||||||||||||||||||||| |||| || || ||||||||| Sbjct 1071 TAAACTAGGAGTCAAGGAGCTTGCAGAAAAACCAAAACCGCCTGTGAACAATGCTAACAC 1130 Query 1607 AGAGAATCAGAGCAATAAAACAAACC-GTAAGAGAAGCAGATCATCGAGGTGA 1658 ||||||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 1131 AGAGAATCAGAGCAAGAAAA-AAACCCGTAAGAGAAGCAGATCATCGAGGTGA 1182 > AT1G53023.1 | Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19754214-19755843 REVERSE LENGTH=951 Length=951 Score = 621 bits (336), Expect = 6e-177 Identities = 437/486 (90%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 834 AAGAATTGGGTGAAAAAGGTGCAAGCAGATTGGAAGATTCTTGAGAATG-ATTTGCCAGA 892 ||||||||||||||| | | ||| ||| |||||||||||||| || | |||||||||| Sbjct 166 AAGAATTGGGTGAAAGATATTCAAAAAGAGTGGAAGATTCTTGACAA-GAATTTGCCAGA 224 Query 893 GGCAATATCTGTCAGAGCCTGTGAATCAAGAATGGATCTTTTGAGAGCTGTAATTATTGG 952 | |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 225 GACAATATTTGTCAGAGCATGTGAATCAAGAATTGATCTTTTGAGAGCTGTAATTATTGG 284 Query 953 AGCCGAGGGAACTCCTTACCATGATGGTCTTTTCTTCTTCGATATTCAGTTCCCAGATAC 1012 |||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 285 AGCCGAGGGAACTCCTTACCATGACGGTCTCTTCTTTTTCGATATTCAGTTCCCAGATAC 344 Query 1013 CTATCCTTCAGTACCACCAAAAGTTCATTACCATTCCGGTGGGCTTAGAATCAACCCGAA 1072 |||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 345 CTATCCTTCAGTGCCACCAAAAGTTCATTACCATTCGGGCGGGCTTAGAATCAACCCGAA 404 Query 1073 TCTATACAATTGTGGTAAAGTATGCTTGAGTCTTCTCGGTACCTGGGCCGGCAGTGCTAG 1132 ||||||||| ||||||||||| |||||||||||| || |||||||| |||| | || Sbjct 405 TCTATACAAATGTGGTAAAGTGTGCTTGAGTCTTATCAGTACCTGGACCGGTAAAAAGAG 464 Query 1133 GGAGAAATGGCTCCCAAAGGAGTCGACAATGTTACAGCTTCTTGTCTCAATCCAAGCACT 1192 ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 465 GGAGAAATGGCTCCCCAAGGAGTCCACAATGTTGCAGCTTCTTGTCTCAATCCAAGCACT 524 Query 1193 CATCTTGAATGAAAAACCATACTT-TAACGAGCCTGGCTACGTACAGAGC-ATGGGGACT 1250 |||||||||||||||||||| || ||||||||||||||||| | | | | ||||||||| Sbjct 525 AATCTTGAATGAAAAACCATA-TTATAACGAGCCTGGCTACG-AGAAATCCATGGGGACT 582 Query 1251 GCATCAGGCGAGTCCCATTCTAAAGTTTACAGTGAGAACGTATTCCTATTGTCGTTAAAG 1310 ||| |||||||||| ||||||||| ||| ||||||||||||||| |||| ||||||||| Sbjct 583 CCATTAGGCGAGTCCTATTCTAAAGATTATAGTGAGAACGTATTCGTATTTTCGTTAAAG 642 Query 1311 ACTATG 1316 |||||| Sbjct 643 ACTATG 648 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82931300340 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5