BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg923937
Length=1321
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53750.1 | Symbols: RPT1A | regulatory particle triple-A 1A ... 2213 0.0
AT1G53780.2 | Symbols: | peptidyl-prolyl cis-trans isomerases;... 1570 0.0
AT1G53790.2 | Symbols: | F-box and associated interaction doma... 263 3e-69
AT3G42052.1 | Symbols: | transposable element gene | chr3:1423... 115 1e-24
> AT1G53750.1 | Symbols: RPT1A | regulatory particle triple-A 1A
| chr1:20065714-20068466 REVERSE LENGTH=1630
Length=1630
Score = 2213 bits (1198), Expect = 0.0
Identities = 1267/1301 (97%), Gaps = 2/1301 (0%)
Strand=Plus/Plus
Query 7 GAAATCCGGCGAAAATGGTGAGAGATATTGAAGATGAGATCAGAGACGAGAAGAATCCTC 66
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 129 GAAATCCGGCGACAATGGTGAGAGATATTGAAGATGAGATTAGAGACGAGAAGAATCCTC 188
Query 67 GTCCGCTTGACGAAGATGATATCGCTCTCCTCAAGACTTATGGGTTAGGGCCTTACTCTG 126
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GTCCTCTTGATGAAGATGATATCGCTCTCCTCAAGACTTATGGGTTAGGGCCTTACTCTG 248
Query 127 CACCTATCAAGAAAGTGGAGAAAGAAATTAAGGATCTCGCCAAGAAGATCAACGATCTAT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CACCTATCAAGAAAGTGGAGAAAGAAATTAAGGATCTCGCCAAGAAGATCAACGATCTAT 308
Query 187 GTGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCCCAGTCAATGGGATCTTGTATCTG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GTGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCCCAGTCAATGGGATCTTGTATCTG 368
Query 247 ATAAGCAAATGATGCAAGAGGAGCAACCTCTGCAGGTTGCGAGATGCACAAAGATAATAA 306
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 369 ATAAGCAAATGATGCAAGAAGAGCAACCTCTGCAGGTTGCGAGATGCACAAAGATTATAA 428
Query 307 GTCCAAACACCGAAGATGCAAAATACGTCATTAATGTCAAACAAATTGCTAAGTTTGTTG 366
|||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 429 GTCCAAACACTGAAGACGCCAAATACGTCATAAATGTCAAACAAATTGCTAAGTTTGTTG 488
Query 367 TTGGACTTGGCGATAAAGTTTCTCCCACTGATATTGAAGAAGGCATGCGTGTGGGAGTTG 426
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 489 TTGGACTTGGCGATAAAGTTTCTCCCACTGATATTGAGGAAGGCATGCGTGTTGGAGTTG 548
Query 427 ATCGGAATAAATATCAGATTCAGATTCCTCTACCTCCGAAAATCGATCCTAGCGTGACCA 486
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 549 ATCGGAATAAATATCAGATTCAGATTCCTCTACCTCCCAAAATCGATCCTAGCGTGACCA 608
Query 487 TGATGACAGTCGAAGAGAAACCTGATGTAACTTACAATGATGTTGGTGGCTGTAAGGAGC 546
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 609 TGATGACTGTCGAAGAGAAACCTGATGTAACTTACAATGATGTTGGTGGATGCAAGGAGC 668
Query 547 AGATTGAGAAGATGCGAGAGGTTGTTGAACTGCCAATGCTTCATCCAGAGAAATTTGTGA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 AGATTGAGAAGATGCGAGAGGTTGTTGAACTGCCAATGCTTCATCCAGAGAAATTTGTGA 728
Query 607 AGCTTGGAATAGATCCTCCCAAGGGTGTTCTCTGCTATGGTCCTCCTGGTACTGGTAAAA 666
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 729 AGCTTGGAATAGATCCTCCCAAGGGTGTTCTCTGCTACGGACCTCCTGGTACTGGTAAAA 788
Query 667 CCCTTCTGGCTAGAGCTGTGGCCAACAGAACCGATGCTTGCTTTATCAGGGTTATCGGCA 726
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 789 CTCTTCTGGCTAGAGCTGTGGCCAACAGAACCGATGCTTGCTTTATCAGGGTTATTGGAA 848
Query 727 GTGAGCTTGTTCAGAAGTATGTTGGTGAAGGAGCTAGGATGGTTCGTGAACTGTTTCAGA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GTGAGCTTGTTCAGAAGTATGTTGGTGAAGGAGCTAGGATGGTTCGTGAACTGTTTCAGA 908
Query 787 TGGCACGGTCCAAGAAAGCTTGCATTGTATTCTTTGATGAAGTTGATGCCATTGGTGGTG 846
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 909 TGGCACGGTCCAAGAAAGCCTGCATTGTGTTCTTTGACGAAGTTGATGCCATTGGTGGTG 968
Query 847 CAAGATTTGATGACGGTGTTGGTGGTGATAATGAAGTCCAACGTACTATGCTTGAGATTG 906
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 969 CAAGATTTGATGATGGTGTTGGTGGTGATAACGAAGTCCAACGTACTATGCTTGAGATTG 1028
Query 907 TGAATCAGCTTGATGGGTTCGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACA 966
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TGAATCAGCTTGATGGGTTTGACGCACGTGGTAACATCAAGGTTCTTATGGCAACAAACA 1088
Query 967 GGCCTGACACACTAGACCCAGCTCTTTTACGTCCTGGACGTCTTGACCGTAAGGTTGAGT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGCCTGACACACTAGACCCAGCTCTTTTACGTCCTGGACGTCTTGACCGTAAGGTTGAGT 1148
Query 1027 TTGGTCTTCCTGACCTGGAGAGCAGAACACAGATCTTCAAGATTCACACACGAACCATGA 1086
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1149 TTGGTCTACCTGACCTGGAGAGCAGAACACAGATCTTCAAGATTCACACAAGAACCATGA 1208
Query 1087 ACTGCGAAAGAGACATCCGTTTCGAACTCCTTGCTCGCCTCTGCCCAAACTCAACCGGAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1209 ACTGCGAAAGAGACATCCGTTTCGAACTCCTTGCTCGCCTCTGCCCAAACTCAACGGGAG 1268
Query 1147 CTGATAT-CAGAAGTGTATGCACTGAAGCAGGAATGTACGCAATCAGAGCTAGGAGAAAG 1205
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CTGATATTC-GAAGTGTATGCACTGAAGCAGGAATGTACGCAATCAGAGCTAGGAGAAAG 1327
Query 1206 ACTGTGACTGAGAAAGACTTTCTGGACGCAGTGAACAAAGTCATTAAAGGTTACCAAAAG 1265
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1328 ACTGTGACTGAGAAAGACTTTCTAGACGCAGTGAACAAAGTCATTAAAGGTTACCAAAAG 1387
Query 1266 TTCAGTGCCACTCCCAAGTACATGGTCTACAATTAGAGAGA 1306
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 1388 TTCAGTGCCACTCCCAAGTATATGGTCTACAATTAGAGAGA 1428
> AT1G53780.2 | Symbols: | peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP
binding;nucleotide
binding;ATPases | chr1:20073996-20077748 REVERSE LENGTH=2114
Length=2114
Score = 1570 bits (850), Expect = 0.0
Identities = 1100/1219 (90%), Gaps = 24/1219 (2%)
Strand=Plus/Plus
Query 113 AGG-GCCTTACTCTGCAC-CTATCAAGAAAGTGGAGAAAGAAATTAAGGATCTCGCCAAG 170
||| |||||||||||||| | || |||||||| ||||||||||| || || |||||| ||
Sbjct 709 AGGAGCCTTACTCTGCACGC-ATAAAGAAAGTAGAGAAAGAAATCAATGAGCTCGCCGAG 767
Query 171 AAGATCAACGATCTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCCCAGTCAA 230
|||||| | ||| | ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 768 AAGATCTGCAATC--T-TGGTATCAAGGAGTCCGATACTGGTTTAGCTCCTCCCAATCAA 824
Query 231 TGGGATCTTGTATCTGATAAGCAAATGATGCAAGAGGAGCAACCTCTGCAGGTTGCGAGA 290
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 825 TGGGATCTTGTATCTGATAAGCAAATGATGCAAGAGGAGCAACCTCTGCTTGTTGCGACA 884
Query 291 TGCACAAAGATAATAAGTCCAAACACCGAAGATGCAAAATACGTCATTAATGTCAAACAA 350
|||||| ||||||| ||||||||||| ||||||||||| || ||| || || ||||| ||
Sbjct 885 TGCACACAGATAATCAGTCCAAACACTGAAGATGCAAAGTATGTCGTTGATATCAAA-AA 943
Query 351 -ATTG-CTAAGTTTGTTGTTGGACTTGGCGATAAAGTTTCTCCCACTGATATTGAAGAAG 408
|| | | |||| ||||||||||||||||||||||| |||||||||||| || |||| ||
Sbjct 944 GATAGGC-AAGTATGTTGTTGGACTTGGCGATAAAGCTTCTCCCACTGACATAGAAGCAG 1002
Query 409 GCATGCGTGTGGGAGTTGATCGGAATAAATATCAGATTCAGATTCCTCTACCTCCGAAA- 467
| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||
Sbjct 1003 GAATGCGTGTGGGAGTTGATCAGAAGAAATATCAGATACAGATTCCTCTACCTCC-AAAG 1061
Query 468 ATCGATCCTAGCGTGACCATGATGACAGTCGAAGAGAAACCTGATGTAACTTACAATGAT 527
|| |||||||| |||||||||||||| || |||||||||||||||| |||||||| ||||
Sbjct 1062 ATTGATCCTAGTGTGACCATGATGACGGTTGAAGAGAAACCTGATGCAACTTACAGTGAT 1121
Query 528 GTTGGTGGCTGTAAGGAGCAGATTGAGAAGATGCGAGAGGTTGTTGAACTGCCAATGCTT 587
| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1122 ATCGGTGGCTGCAAGGAGCAGATTGAGAAGATTAGAGAGGTCGTTGAACTGCCAATGCTT 1181
Query 588 CATCCAGAGAAATTTGTGAAGCTTGGAATAGATCCTCCCAAGGGTGTTCTCTGCTATGGT 647
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1182 CATCCAGAGAAATTTGTGAGGCTTGGAATAGATCCTCCCAAGGGTGTTCTTTGCTATGGT 1241
Query 648 CCTCCTGGTA-CTGGTAAAACCCTTCTGGCTAGAGCTGTGGCCAACAGAACCGATGCTTG 706
|||||||||| | || ||||||||| | |||||||||||||| || ||||| | ||||||
Sbjct 1242 CCTCCTGGTAGC-GGAAAAACCCTTGTCGCTAGAGCTGTGGCGAATAGAACTGGTGCTTG 1300
Query 707 CTTTATCAGGGTTATCGGCAGTGAGCTTGTTCAGAAGTATGTTGGTGAAGGAGCTAGGAT 766
||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1301 CTTTATCAGGGTTGTTGGCAGTGAGCTCGTTCAGAAGTACATTGGTGAAGGAGCTAGGAT 1360
Query 767 GGTTCGTGAACTGTTTCAGATGGCACGGTCCAAGAAAGCTTGCATTGTATTCTTTGATGA 826
|||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||
Sbjct 1361 GGTTCGTGAACTGTTTCAGATGGCACGGTCAAAGAAAGCTTGCATTTTGTTCTTTGACGA 1420
Query 827 AGTTGATGCCATTGGTGGTGCAAGATTTGATGACGGTGTTGGTGGTGATAATGAAGTCCA 886
| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1421 AATTGATGCCATTGGCGGTGCAAGATTTGATGACGGTGTAGGCAGTGATAATGAAGTCCA 1480
Query 887 ACGTACTATGCTTGAGATTGTGAATCAGCTTGATGGGTTCGACGCACGTGGTAACATCAA 946
|||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 1481 ACGTACCATGCTTGAGATTTTGTATCAGCTTGATGGGTTTGACGCACGTGGTAACATCAA 1540
Query 947 GGTTCTTATGGCAACAAACAGGCCTGACACACTAGACCCAGCTCTTTTACGTCCTGGACG 1006
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1541 GGTTCTTATGGCAACAAACAGGCCTGACATACTAGACCCAGCTCTTTTACGTCCTGGACG 1600
Query 1007 TCTTGACCGTAAGGTTGAGTTTGGTCTTCCTGACCTGGAGAGCAGAACACAGATCTTCAA 1066
||||||||| |||||||||||| |||| ||||| |||||| |||||||||||||||||||
Sbjct 1601 TCTTGACCGCAAGGTTGAGTTTTGTCTGCCTGATCTGGAGGGCAGAACACAGATCTTCAA 1660
Query 1067 GATTCACACACGAACCATGAACTGCGAAAGAGACATCCG-TTTCGAACTCCTTGCTCGCC 1125
||||||||||||||| |||| || |||||||||||||| ||| |||||||||||| |||
Sbjct 1661 GATTCACACACGAACAATGAGTTGTGAAAGAGACATCCGGTTT-GAACTCCTTGCTGGCC 1719
Query 1126 TCTGCCCAAACTCAACCGGAGCTGATATCAGAAGTGTATGCACT-GAAGCAGGAATGTAC 1184
|||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 1720 TCTGCCCAAACTCAACCGGAGCTGATATCAGAAGTGTATGCA-TAGAAGCCGGAATGTAT 1778
Query 1185 GCAATCAGAGCTAGGAGAAAGACTGTGACTGAGAAAGACTTTCTGGACGCAGTGAACAAA 1244
|||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1779 GCAATCGGAGCTAGGAGAAAGTCTGTGACTGAGAAGGACTTTCTGGACGCAGTGAACAAA 1838
Query 1245 GTCATTAAAGGTTACCAAAAGTTCAGTGCCACTCCCAAGTACATGGTCTAC-A-ATT-AG 1301
|| |||||||||| |||||||||||||| || |||||||| |||| |||| | ||| ||
Sbjct 1839 GTTGTTAAAGGTTATCAAAAGTTCAGTGCAACACCCAAGTATATGGCCTACTACATTTAG 1898
Query 1302 AGAGAGATAGA-AGAAGTC 1319
| || | |||| |||||||
Sbjct 1899 AAAG-G-TAGAGAGAAGTC 1915
> AT1G53790.2 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20079081-20081455 REVERSE LENGTH=1852
Length=1852
Score = 263 bits (142), Expect = 3e-69
Identities = 154/160 (96%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 68 TCCGCTTGACGAAGATGATATCGCTCTCCTCAAGACTTATGGGTTAGGGCCTTACTCTGC 127
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 85 TCCGCTTGACGAAGATGATATCGCTCTCGTCAAGACTTATGGGTTAGTGCCTTACTCTGC 144
Query 128 ACCTATCAAGAAAGTGGAGAAAGAAATTAAGGATCTCGCCAAGAAGATCAACGATCTATG 187
||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 145 ACCTATCAAGAAAGTGGAGAAAGAAATTAAGGAACTCACCGAGAAGATCAACGATCTATG 204
Query 188 TGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCCCAGT 227
||||||||||||||||||||||||||||||||||| ||||
Sbjct 205 TGGTATCAAGGAGTCTGATACTGGTTTAGCTCCTCTCAGT 244
> AT3G42052.1 | Symbols: | transposable element gene | chr3:14235495-14242638
FORWARD LENGTH=7144
Length=7144
Score = 115 bits (62), Expect = 1e-24
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 32 TATTGAAGATGAGATCAGAGACGAGAAGAATCCTCGTCCGCTTGACGAAGATGATATCGC 91
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3915 TATTGAAGATGAGATCAGAGACGAGAAGAATCCTCGCCCGCTTTTTGAAGATGATATCGC 3974
Query 92 TCTCCTCAAGACTTATG 108
|||||||||||| ||||
Sbjct 3975 TCTCCTCAAGACATATG 3991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65009705775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5