BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg923954 Length=1078 Score E Sequences producing significant alignments: (Bits) Value AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135... 1456 0.0 AT1G53887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 115 8e-25 AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146... 111 1e-23 > AT1G53910.1 | Symbols: RAP2.12 | related to AP2 12 | chr1:20135112-20136970 FORWARD LENGTH=1596 Length=1596 Score = 1456 bits (788), Expect = 0.0 Identities = 1019/1122 (91%), Gaps = 49/1122 (4%) Strand=Plus/Plus Query 1 CACCCTCAAGAGTCACCGACATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGC 60 ||||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 111 CACCCTCAAGAATCGCCGCCATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGC 170 Query 61 CGAGGTCTCGCCGTGTTACCAGCGAGTTTATTTGGCCGGATC------------------ 102 ||||||||||||||||||| |||||||||||||||||||||| Sbjct 171 CGAGGTCTCGCCGTGTTACTAGCGAGTTTATTTGGCCGGATCTGAAGAAGAATTTGAAAG 230 Query 103 --T-GAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTTGATTTTGACGCTGAGTTCGAGG 159 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 231 GATCGAAGAAAAGCTCGAAGAATCGTTCGAATTTCTTCGATTTTGACGCTGAGTTCGAAG 290 Query 160 CTGATTTCCAAGGTTTCAAAGATGATTCTTCTATTGATTGCGACGATGATTTCGATGTCG 219 |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||| Sbjct 291 CTGATTTCCAAGGTTTCAAAGATGATTCGTCTATCGATTGCGATGATGATTTCGACGTCG 350 Query 220 GTGATGTTTCCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCGAAA--------C- 270 ||||||||| |||||||||||||||||||||||||||||||||||| ||| | Sbjct 351 GTGATGTTTTCGCCGATGTGAAACCATTCGTTTTCACTTCGACTCCAAAACCCGCCGTCT 410 Query 271 CCGCCG-T-C-GAAGGTTCAGCTTTTGGTAAG-AA---A---G-TT-GATGGGGAAGCTG 318 |||||| | | |||||||||| |||||||||| || | | || |||||||| |||| Sbjct 411 CCGCCGCTGCGGAAGGTTCAGTTTTTGGTAAGAAAGTTACTGGCTTGGATGGGGACGCTG 470 Query 319 AGAAATCTGGAAAGAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 378 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 AGAAATCTGCAAATAGGAAGAGGAAGAATCAGTACCGAGGGATTAGGCAACGTCCTTGGG 530 Query 379 GCAAATGGGCTGCTGAGATACGTGATCCAAGAGAAGGTGCTAGAATCTGGCTTGGAACTT 438 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 531 GAAAATGGGCTGCTGAGATACGTGATCCAAGGGAAGGTGCTAGAATCTGGCTTGGAACGT 590 Query 439 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGGATCCGTGGAT 498 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 591 TCAAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGCTGCAGCGCGGAGAATCCGTGGAT 650 Query 499 CTAAAGCTAAGGTGAATTTCCCTGAGGAAAACCCCAAGGCTAGTTCTCAGAAACGCTCTG 558 ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| Sbjct 651 CTAAAGCTAAGGTGAATTTCCCTGAAGAAAACATGAAGGCTAATTCTCAGAAACGCTCTG 710 Query 559 TGAAGGCTAATCTTCAGAAACCTGTGGCTAAACCTAACCCAAACCCAAGTCCTGCTTTGG 618 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 711 TGAAGGCTAATCTTCAGAAACCAGTGGCTAAACCTAACCCTAACCCAAGTCCAGCTTTGG 770 Query 619 TTCAGAACCT-GAACAACTCCTTTGACAATATGTGTTTCATGGAGGAGGAGAAACACCAA 677 ||||||| || ||||| ||||||||| |||||||||||||| |||||||||||||||| Sbjct 771 TTCAGAA-CTCGAACATCTCCTTTGAAAATATGTGTTTCAT---GGAGGAGAAACACCAA 826 Query 678 CAAGTG-AACAACAACAGCAATCAGTTTGGGTTGACAAACTCCGTTGATGCTGGATGTAA 736 | | |||||||||| ||| ||||||||| |||||||||||||||||||||||||||| Sbjct 827 -GTGAGCAACAACAACAACAACCAGTTTGGGATGACAAACTCCGTTGATGCTGGATGTAA 885 Query 737 CGGGTATCAGTATTTCAGCTCAGACCAGGGTAGTAATTCGTTCGATTGTTCTGAGTTTGG 796 |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 886 TGGGTATCAGTATTTCAGCTCTGACCAGGGTAGTAATTCTTTCGATTGTTCGGAGTTTGG 945 Query 797 TTGGAGCGATCAAGCTCCAATAACTCCCGACATCTCTTCTGCGCTTATCAACAGCAACGA 856 |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| | Sbjct 946 TTGGAGCGATCAAGCTCCGATAACTCCCGACATCTCTTCTGCGGTTATCAACAACAACAA 1005 Query 857 CTCAGGTCTATTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 916 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 CTCAGCTCTGTTCTTTGAGGAAGCCAATCCAGCTAAGAAGCTCAAGTCTATGGATTTCGA 1065 Query 917 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 976 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1066 GACACCTTACAACAACACTGAATGGGACGCTTCACTGGATTTCCTCAACGAAGATGCTGT 1125 Query 977 AACGACTCAGGACAATTGTGCAAACCCTATGGACTTATGGAGCATTGATGAGATTCATTC 1036 |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||| Sbjct 1126 AACGACTCAGGACAATGGTGCAAACCCTATGGACCTATGGAGTATTGATGAAATTCATTC 1185 Query 1037 CATGATCGGAGGAGTCTTCTGAAGAGATCCATTTTCAAGTAA 1078 |||||| |||||||||||||||||||||||| ||||| |||| Sbjct 1186 CATGATTGGAGGAGTCTTCTGAAGAGATCCAGTTTCATGTAA 1227 > AT1G53887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:20122426-20122866 REVERSE LENGTH=441 Length=441 Score = 115 bits (62), Expect = 8e-25 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 1 CACCCTCAAGAGTCACCGACATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGC 60 ||||||||||| || ||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 210 CACCCTCAAGAATCGCCGCCATGTGTGGAGGAGCTATAATATCCGATTTCATTCCACCGC 151 Query 61 CGAGGTCTCGCCGT 74 |||||||||||||| Sbjct 150 CGAGGTCTCGCCGT 137 > AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146-4739136 REVERSE LENGTH=1644 Length=1644 Score = 111 bits (60), Expect = 1e-23 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 20 CATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCACCGCCGAGGTCTCGCCGTGTTAC 79 ||||||||||||||||||||||||||||||||| || ||||||||||| | ||| || || Sbjct 136 CATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCTCCGCGTCAC 195 Query 80 CAGCGAGTTTATTTGGCCGGATCTGAAGAAA 110 | ||||||||| |||||||||||||| ||| Sbjct 196 TAACGAGTTTATCTGGCCGGATCTGAA-AAA 225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52810973340 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5