BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924056
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55480.1 | Symbols: ZKT | protein containing PDZ domain, a K... 1714 0.0
> AT1G55480.1 | Symbols: ZKT | protein containing PDZ domain, a
K-box domain, and a TPR region | chr1:20713684-20715547 FORWARD
LENGTH=1342
Length=1342
Score = 1714 bits (928), Expect = 0.0
Identities = 1028/1077 (95%), Gaps = 4/1077 (0%)
Strand=Plus/Plus
Query 12 AAAGAGTCTCACCATGTCTTTAGCTCCGAGCAGTTATCCATCTCTGTATTCTTCACCTTC 71
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 AAAGAATCTCACCATGTCTTTAGCTCCGAGCAGTTATCCATCTCTGTATTCTTCGCCTTC 185
Query 72 ACTGCCAAGAACACAGCAAACCAAGCAAAGCCCTAGTTTGATCACTCAATCCAGTTTCAT 131
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 186 ACTGCCAAGAACCCAGCAAACCAAGCAAAACCCTAGTTTGATCACTCAATCCAGTTTCAT 245
Query 132 TTCCGCCAAAAGTCTCTTCCTTTCGAGCAATTCGAATTCTTTATGTAATACCCATGTTGC 191
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 246 TTCCGCCAAAAGTCTCTTCCTTTCGAGCAATTCGGCTTCTTTATGCAATACCCATGTTGC 305
Query 192 CAAACGCCGGAATTTAGCTTCGAAGGCGTCGGAGACAGAGTCGACGGC-gaagactgaag 250
|||||||||||||||||||| ||||||||||||||||||||| | || ||| ||||||
Sbjct 306 CAAACGCCGGAATTTAGCTTTGAAGGCGTCGGAGACAGAGTCTTCAGCTAAAG-CTGAAG 364
Query 251 gaggaggagaaggagaagaagaagagaagTATGAAACATATGAAGTTGAAGTGGAGCAGC 310
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 365 CAGGAGGAGACGGAGAAGAAGAAGAGAAGTATGAAACATATGAAATTGAAGTGGAGCAGC 424
Query 311 CTTATGGTTTGAAATTCAGGAAAGGAAGAGATGGTGGCACTTACATTGATGCTATCTTGC 370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 425 CTTATGGTTTGAAATTCAGGAAAGGAAGAGATGGTGGCACTTACATTGATGCTATCTTAC 484
Query 371 CCGGTGGATCAGCTGACAAAACCGGGAAA-TTCACCGTCGGTGACAGGGTTATTGCCACA 429
| ||||||||||||||||||||| ||||| ||||| || || || || ||||||||||||
Sbjct 485 CAGGTGGATCAGCTGACAAAACC-GGAAAGTTCACTGTTGGCGATAGAGTTATTGCCACA 543
Query 430 AGTGCAGTGTTTGGGACAGAGATTTGGCCTGCAGCTGAATACGGTAGGACAATGTACACA 489
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 544 AGTGCAGTATTTGGAACAGAGATTTGGCCTGCAGCTGAGTACGGTAGGACAATGTACACA 603
Query 490 ATCCGTCAGAGAATTGGTCCCTTGCTTATGCAAATGGAGAAGAGAAATGGTAAGGCTGAA 549
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ATTCGTCAGAGAATTGGTCCCTTGCTTATGCAAATGGAGAAGAGAAATGGTAAGGCTGAA 663
Query 550 GATACTGGTGAGTTAACAGAGAAGGAGATAATAAGAGCTGAGAGGAACGCCGGATACATT 609
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 664 GATACTGGTGAGTTAACAGAGAAGGAGATCATAAGAGCTGAGAGAAATGCCGGATACATT 723
Query 610 AGCAGTAGATTGAGGGAAATTCAGATGCAAAACTATTTGAGGAAGAAAGAACAGAAAGCT 669
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 724 AGCAGTAGATTGAGAGAGATTCAGATGCAAAACTATTTGAAGAAGAAAGAACAGAAAGCT 783
Query 670 CAACGGGAGAAAGATCTTCGTGAAGGGCTGCAGTTTTCCAAGAATGGTAAATATGAGGAA 729
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 784 CAACGGGAGAAGGATCTTCGTGAAGGGCTGCAATTTTCCAAGAATGGTAAGTATGAGGAA 843
Query 730 GCATTGGAGAGATTTGAGTCTGTGTTAGGTTCTAAACCAACACCAGAAGAAGCATCAGTT 789
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 844 GCATTGGAGAGGTTTGAGTCGGTGTTAGGTTCTAAACCAACACCAGAAGAAGCATCAGTT 903
Query 790 GCAAGTTACAATGTTGCTTGTTGCTACTCAAAGCTTAATCAGGTTCAAGCTGGTCTCTCG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GCAAGTTACAATGTTGCTTGTTGCTACTCAAAGCTTAATCAGGTTCAAGCTGGTCTCTCG 963
Query 850 GCTCTGGAAGAAGCATTGAAGTCAGGATATGAAGATTTTAAGAGAATCAGAACAGATCCA 909
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 964 GCTCTGGAAGAAGCATTGAAGTCAGGATATGAAGATTTTAAGAGAATCAGAAGTGATCCA 1023
Query 910 GACCTGGAAAATCTTAGGAAGTCGAAGGATTTCGATCCACTCCTGAAGCAATTCGACGAA 969
|| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1024 GATCTGGAAACTCTCAGGAAGTCGAAGGATTTCGATCCACTTCTGAAGCAATTCGACGAA 1083
Query 970 TCTTTCATCAACGAGAGTGCCATTAACGCCATCAAGTCCTTGTTTGGCTTTAACAAGAAA 1029
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1084 TCTTTCATCAATGAGAGTGCCATTAACGCCATCAAATCCTTGTTTGGCTTTAACAAGAAA 1143
Query 1030 TAGTTCACCTAAAGTTTGTGTCTTTTGATGTGATCTGTTCATAGCTTCTCTTCTCTT 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TAGTTCACCTAAAGTTTGTGTCTTTTGATGTGATCTGTTCATAGCTTCTCTTCTCTT 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212577700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5