BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924095 Length=1031 Score E Sequences producing significant alignments: (Bits) Value AT1G55760.1 | Symbols: | BTB/POZ domain-containing protein | c... 1644 0.0 > AT1G55760.1 | Symbols: | BTB/POZ domain-containing protein | chr1:20846908-20849054 REVERSE LENGTH=1746 Length=1746 Score = 1644 bits (890), Expect = 0.0 Identities = 986/1033 (95%), Gaps = 4/1033 (0%) Strand=Plus/Plus Query 1 CGGCTTTGGCTTTTGCTAGGATGACTGATTCTGCTTACAGAGTAGACACCATTTCCAGAC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 528 CGGCTTTGGCTTTTGCTAGGATGACTGATTCTGCTTACAGAGTAGACACCATTTCTAGAC 587 Query 61 TCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 TCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCA 647 Query 121 AGATGGGTCTTTGGAATTGGCACTTGTCTGTAGAGAAAAGCAAGATGCTATTAAATGTTA 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 648 AGATGGGTCTTTGGAATTGGCACTTGTCTGTGGAGAAAAGCAAGATGCTATTAAATGTTA 707 Query 181 AGTTGTATCCAGAGGTATCCAACCTTACCAGAGAAAATCCACCAGTTGCTTCCTTTGTTC 240 ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct 708 AGTTGTATCCAGAGGTATCAAACCTTACCAGAGAAAATCCACCGGTTGCTTCCTTTGCTC 767 Query 241 TTCGTGTTGTCTCTTCTGCTGGTGATAGGAAAG-CTTTATCTCATCCAGAAGTAATAGAT 299 ||||||||||||||||| ||||||| || |||| || ||||||||||||||||||||||| Sbjct 768 TTCGTGTTGTCTCTTCTACTGGTGAGAG-AAAGGCTCTATCTCATCCAGAAGTAATAGAT 826 Query 300 AAGCGAATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAA 359 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 827 AAGCGGATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAA 886 Query 360 ATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTCTGTCTCAAGATAGTGGAGAAATT 419 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 887 ATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTTTGTCTCAAGATAGTGGAGAACTT 946 Query 420 TACTCTATCTGGGC-AGACGGTTCAACCGAGAATCAATCGAAAGGGACAGCGGTAACATC 478 |||||||||||||| | |||||||||| |||||||||||| ||| || ||||||||||| Sbjct 947 TACTCTATCTGGGCCA-ACGGTTCAACTGAGAATCAATCGCAAGTAACTGCGGTAACATC 1005 Query 479 CCTTGGACGTATGTTGACAGAAAGCATTTACACTGACATAATGATCAATGCTTCGGGTGG 538 ||||||||||||||||||||||||||||||||| ||||||| ||||||||| || | ||| Sbjct 1006 CCTTGGACGTATGTTGACAGAAAGCATTTACACCGACATAACGATCAATGCCTCTGATGG 1065 Query 539 AAGCATTGGAGCTCACCGAGCTGTTCTTGCTGCCCGTTCACCTGTTTTCCGCAGCATGTT 598 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1066 AAGCATTGGAGCTCACCGAGCAGTTCTCGCTGCCCGTTCACCTGTTTTCCGCAGCATGTT 1125 Query 599 TTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACATACTCGACATGCCACTTGA 658 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1126 TTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACGTACTCGACATGCCACTTGA 1185 Query 659 TGCTTGCCAAGCTTTTCTGAGTTATATCTACGGCAATATCCAGAACGAAGACTTTCTTAT 718 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1186 TGCTTGCCAAGCTTTTCTCAGTTATATCTACGGCAATATCCAAAACGAAGACTTTCTTAT 1245 Query 719 ACACAGATTGGCACTCCTCCAAGCAGCTGAAAAATATGATATTGCTGATTTAAAAGACGC 778 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1246 ACACAGATTGGCACTCCTCCAAGCAGCTGAGAAATATGATATTGCTGATTTAAAAGAGGC 1305 Query 779 ATGCCACTTGAGCCTTCTAGACGACATCGACACGAAGAATGTGCTTGAGAGGCTACAAAA 838 ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 1306 GTGCCACTTGAGTCTTCTAGACGATATCGACACAAAGAATGTGCTTGAGAGGCTACAGAA 1365 Query 839 TGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGGTATCTTGTGAAGTT 898 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1366 TGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGATATCTTGTGAAGTT 1425 Query 899 TGGTAAGATATTTGAAATCCGCGATGAGTTCAACATATTCATGCAATGCGCAGACAGAGA 958 ||| || |||||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1426 TGGCAAAATATTTGAGATCCGAGACGAGTTCAACATATTCATGCAATGCGCAGACAGAGA 1485 Query 959 TTTGATTTCTGAAGTCTTCCACGAAGTCCTCGGTACCTGGAAAGGATTTTAGAGGAAATC 1018 ||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1486 TTTGATTTCTGAAATCTTCCACGAAGTCCTCAGTACCTGGAAAGGATTTTAGGGGAAATC 1545 Query 1019 AGAATGGGTATGT 1031 |||| |||||||| Sbjct 1546 AGAAAGGGTATGT 1558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50535551882 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5