BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924165 Length=1092 Score E Sequences producing significant alignments: (Bits) Value AT1G54320.1 | Symbols: | LEM3 (ligand-effect modulator 3) fami... 1781 0.0 AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3... 1033 0.0 > AT1G54320.1 | Symbols: | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr1:20275534-20277957 REVERSE LENGTH=1412 Length=1412 Score = 1781 bits (964), Expect = 0.0 Identities = 1034/1069 (97%), Gaps = 0/1069 (0%) Strand=Plus/Plus Query 21 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 222 Query 81 CCGCCAGGAAGAATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 140 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CCGCTAGGAAGAATTCAAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 282 Query 141 CTTGCAAGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 200 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 CTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 342 Query 201 TCTTTATTCCCCTTGGAGTTATCTCTCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 260 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 343 TCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 402 Query 261 ACCGGTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTC 320 | |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 403 ATCGGTATGATACTGAGTGCATTCCGGCACCTGCTAGGACTAACAAGGTTGCATATATTC 462 Query 321 AAGGAGATGGAGATAAAGTTTGTACCCGGGATCTTAAAGTGACAAAGCGTATGAAACAGC 380 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | Sbjct 463 AAGGAGATGGAGATAAAGTTTGTAACCGGGATCTTAAAGTGACAAAGCGTATGAAGCAAC 522 Query 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440 || |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 523 CTATCTATGTTTATTACCAACTTGAGAATTTCTACCAGAATCACCGAAGGTATGTAAAAA 582 Query 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATAAGCGCATGCAAGC 500 | |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 583 GTCGAAGTGATTCACAGTTGAGAAGTACAAAATACGAGAATCAAATAAGTGCATGCAAGC 642 Query 501 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTCT 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 643 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTTT 702 Query 561 TTAATGACACATACGCCTTATCAAGAAACAATGTAAGCCTAGCTGTAAACAAAAAAGGCA 620 |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 703 TTAACGACACATACGCGTTATCAAGAAACAATGTAAGCCTAGCTGTGAACAAAAAAGGCA 762 Query 621 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 822 Query 681 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAAAATACCGCTTAGTGAACAAG 740 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 823 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAGAATACCGCTTAGTGAACAAG 882 Query 741 AAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 800 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 883 AAGATCTCATTGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 942 Query 801 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACAACTACA 860 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 943 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTAAGCTGAACAACAACTACA 1002 Query 861 ACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 920 |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1003 ACACGTACAGCTTCAATGGAAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 1062 Query 921 GGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCTTTTTGG 980 ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 1063 GGAAGAACGATTTCCTTGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCATTTTGG 1122 Query 981 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCCATCCTACT 1040 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1123 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGTCTTGGAGATCCGTCCTACT 1182 Query 1041 TGTCATGGAATAGAAATCCCGGAGGTCGGTAACAAGCTTGGAGAGGGAG 1089 ||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1183 TGTCATGGAATAGAAATCCTGGAGGTCGGTAACAAGCTTGGAAAGGGAG 1231 > AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:4049515-4051775 FORWARD LENGTH=1491 Length=1491 Score = 1033 bits (559), Expect = 0.0 Identities = 898/1060 (85%), Gaps = 30/1060 (3%) Strand=Plus/Plus Query 28 TTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCGCCGCCAG 87 ||| || ||| | || || ||||| | || ||||||||| |||||||||||||||| | Sbjct 233 TTCTAACACGCCATCTTCTAGCGCCGCCGCTGCCGGATCGATAGATTCTTCCGCCGCCCG 292 Query 88 GAAG-AATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAGCTTGCA 146 | || ||||| ||| |||||||||||||||| || || |||||||||||||| ||||||| Sbjct 293 G-AGAAATTCCAAGAGACCCAAGTATTCGAAATTTACTCAGCAGGAGCTTCCTGCTTGCA 351 Query 147 AGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGAT-AGTCAGTGTTATCTTT 205 | |||||||| || ||||||||||| ||||| || |||||||| | | ||||||||||| Sbjct 352 AACCAATTCTTACGCCTGGTTGGGTGATTTCAACGTTTTTGATCA-TTAGTGTTATCTTC 410 Query 206 ATTCCCCTTGGAGTTATCTCTCT-TTTCGCTTCCCAGGATGTTGTGGAGATCGTTGACCG 264 ||||||||||| ||||| ||||| ||| ||||| ||||||||||| ||||||||||| || Sbjct 411 ATTCCCCTTGGTGTTATTTCTCTCTTT-GCTTCTCAGGATGTTGTTGAGATCGTTGATCG 469 Query 265 GTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTCAAGG 324 |||||||| || |||||| || | ||| |||| |||||||| ||||||| |||||||| Sbjct 470 GTATGATAGTGCATGCATACCTCTATCTGATAGGGCTAACAAGGTTGCATACATTCAAGG 529 Query 325 AGA-TGGAGATAAAGT-TTGTACCCGGGATC-TTAA-AGTGACAAAGCGTATGAAACAGC 380 | | |||| ||||| | |||||||| ||| | ||| ||| | ||||||||||| |||| Sbjct 530 A-ACTGGAAATAAA-TCTTGTACCC-GGA-CGCTAATTGTGCCTAAGCGTATGAAGCAGC 585 Query 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440 || |||| || ||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 586 CTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAAA 645 Query 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATA-AGCGCATGCAAG 499 ||||||||||||| || ||||||||| ||| | |||||||||||| | |||||||||| Sbjct 646 GCCGAAGTGATTCGCAATTGAGAAGTGTGAAAGATGAGAATCAAATAGA-CGCATGCAAG 704 Query 500 CCTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTC 559 |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 705 CCTGAGGATGATTTTGGTGGGCAGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 764 Query 560 TTTAATGACACATACGC-CTTATCAAGAAACAATGTAAGCCT-AGCTGTAAACAAAAAAG 617 |||||||||||||||| || ||||||||| || | | | | | |||||||| |||| Sbjct 765 TTTAATGACACATACGTTCT-ATCAAGAAATAACC-AGGGTTTAACGGTAAACAAGAAAG 822 Query 618 GCATTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATT 677 | |||||||||||||| ||||||||||||||||||||||| || || || |||||||| | Sbjct 823 GAATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTGTTTCCCAAGAACT 882 Query 678 TTCAAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAA-AATACCGCTT-AGTGA 735 |||| ||||| ||| |||| |||||||| | | |||||||||| || ||| || ||||| Sbjct 883 TTCAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAA-ACCA-TTGAGTGA 940 Query 736 ACAAGAAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTT-T 794 ||||| ||||| |||||||||||||| || || || |||||||||||||||||| || | Sbjct 941 TCAAGAGGATCTGATCGTGTGGATGAGGACTGCTGCGTTGCCAACATTTAGAAAA-TTAT 999 Query 795 ACGGAAAGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACA 854 |||| ||||||||| |||| | |||| |||||| | |||||| || || ||| |||||| Sbjct 1000 ACGGGAAGATAGAGAGTGACTTGGAGAAGGGTGAGAACATACAAGTGACTCTGCAGAACA 1059 Query 855 ACTACAACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGC 914 |||||||||| |||||||||| ||||||||||||||||||| ||||||| || ||||||| Sbjct 1060 ACTACAACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGC 1119 Query 915 TGGGTGGGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGA-TCTGTTTC 973 | ||||| ||||| || |||||||||||||||||||| || ||||| |||| |||||||| Sbjct 1120 TTGGTGGAAAGAACGACTTCCTCGGCATTGCTTACCTCACCGTTGG-GGGAATCTGTTTC 1178 Query 974 TTTTTGGCCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCC- 1032 | ||||| || ||||||||| ||||||| |||||||||||||||||||| || ||||| Sbjct 1179 GTCTTGGCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCT 1238 Query 1033 ATCCTACTTGTCATGGAATAGAAATCCCGGAGGTCGGTAA 1072 | |||||||||| ||||| |||| ||| |||||||| ||| Sbjct 1239 A-CCTACTTGTCGTGGAACAGAATTCCTGGAGGTCGTTAA 1277 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53513780970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5