BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924173 Length=1342 Score E Sequences producing significant alignments: (Bits) Value AT5G48930.1 | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/qui... 1812 0.0 > AT5G48930.1 | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836299-19838162 REVERSE LENGTH=1727 Length=1727 Score = 1812 bits (981), Expect = 0.0 Identities = 1204/1315 (92%), Gaps = 2/1315 (0%) Strand=Plus/Plus Query 20 TATGAAAATTAACATCCGAGATTCCACCATGGTCCGGCCTGCCGCCGAGACGCCTATCAC 79 |||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| Sbjct 70 TATGAAAATTAACATCAGAGATTCCACCATGGTCCGGCCTGCCACCGAGACACCAATCAC 129 Query 80 TAATCTTTGGAACTCCAACGTTGACCTTGTTATCCCCAGATTCCACACCCCCAGTGTCTA 139 ||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| Sbjct 130 TAATCTTTGGAACTCCAACGTCGACCTTGTCATCCCCAGATTCCATACCCCTAGTGTCTA 189 Query 140 CTTCTACAGACCCACCGGTGCCTCCAATTTCTTCGACCCTCAGATCATGAAGGACGCTCT 199 |||||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||||| Sbjct 190 CTTCTACAGACCCACCGGCGCTTCCAATTTCTTTGACCCTCAGGTCATGAAGGAAGCTCT 249 Query 200 CTCCAAGGCCCTCGTCCCCTTTTACCCCATGGCCGGTCGCTTGAAGAGAGACGATGATGG 259 ||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 250 TTCCAAAGCCCTTGTCCCTTTTTACCCTATGGCTGGTCGCTTGAAGAGAGACGATGATGG 309 Query 260 TCGTATCGAGATTGATTGCAACGGCGCCGGTGTTCTCTTCGTCGTTGCCGATACTCCCTC 319 |||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||| || Sbjct 310 TCGTATTGAGATCGATTGTAACGGTGCTGGTGTTCTCTTCGTTGTGGCTGATACTCCTTC 369 Query 320 TGTCATCGATGATTTTGGTGACTTCGCTCCTACCCTCAATCTCCGCCAGCTTATTCCCGA 379 ||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| Sbjct 370 TGTTATCGATGATTTTGGTGATTTTGCTCCTACCCTTAATCTCCGTCAGCTTATTCCCGA 429 Query 380 TGTTGATCACTCCGCCGGCATCCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACCTTCTT 439 |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 430 AGTTGATCACTCCGCTGGCATTCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACTTTCTT 489 Query 440 TAAATGCGGGGGAGCTTCCCTTGGGGTTGGTATGCAACACCACGCTGCAGATGGTTTCTC 499 |||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 490 TAAATGTGGGGGAGCTTCACTTGGGGTTGGGATGCAACATCACGCGGCAGATGGTTTCTC 549 Query 500 TGGTCTCCACTTTATCAACACATGGTCTGATATGGCCCGTGGTCTTGACCTTACCATTCC 559 |||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 550 TGGTCTTCATTTTATCAACACATGGTCTGATATGGCTCGTGGTCTTGACCTAACCATTCC 609 Query 560 ACCCTTCATTGATCGAACCCTCCTCCGCGCTCGGGACCCGCCTCAGCCTGCTTTTCATCA 619 ||| |||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||| Sbjct 610 ACCTTTCATTGATCGAACACTCCTCCGAGCTAGGGACCCGCCACAGCCTGCTTTTCATCA 669 Query 620 TGTTGAATATCAGCCTGCCCCCAGTATGAGGATCCCTCTTGATCCGTCCAAATCAGGCCC 679 |||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||| || Sbjct 670 TGTTGAATATCAGCCTGCACCAAGTATGAAGATACCTCTTGATCCGTCTAAATCAGGACC 729 Query 680 TGACAATACCACCGTCTCTATTTTCAAATTATCACGCGACCAGCTTGTTGCTCTCAAGGC 739 ||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| ||||| Sbjct 730 TGAGAATACCACTGTCTCTATATTCAAATTAACACGAGACCAGCTTGTTGCTCTTAAGGC 789 Query 740 TAAATCCAAGGAGGATGGGAACATTGTAAGTTACAGCTCATACGAGATGCTGGCAGGCCA 799 |||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| || Sbjct 790 GAAATCCAAGGAGGATGGGAACACTGTCAGCTACAGCTCATACGAGATGTTGGCAGGGCA 849 Query 800 CGTGTGGAGATCAGTGGGCAAGGCGCGCGGACTTCCAGACGACCAAGAGACCAAATTGTA 859 ||||||||||||||||| |||||||| || |||||| ||||||||||||| ||| |||| Sbjct 850 TGTGTGGAGATCAGTGGGAAAGGCGCGAGGGCTTCCAAACGACCAAGAGACGAAACTGTA 909 Query 860 TATTGCAACTGATGGAAGGTCCAGACTGCACCCGCAGCTTCCCCCTGGTTACTTTGGCAA 919 |||||||||||||||||||| ||||| | |||||||| || |||||||||||||| || Sbjct 910 CATTGCAACTGATGGAAGGTCTAGACTACGTCCGCAGCTGCCTCCTGGTTACTTTGGGAA 969 Query 920 TGTTATATTCACCGCGACACCATTGGCCGTTGCAGGGGATCTGCTATCAAAGCCAACGTG 979 ||| |||||||| || ||||||||||| |||||||||||| || |||| |||||||| || Sbjct 970 TGTGATATTCACTGCAACACCATTGGCTGTTGCAGGGGATTTGTTATCTAAGCCAACATG 1029 Query 980 GTATGCTGCAGGACTTATTCATGATGTT-TTGGTTCGCATGGACGATAACTATCTGAGGT 1038 |||||||||||||| ||||||||| || |||||||| ||||| |||||||||||||||| Sbjct 1030 GTATGCTGCAGGACAGATTCATGAT-TTCTTGGTTCGTATGGATGATAACTATCTGAGGT 1088 Query 1039 CTGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1098 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 CAGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1148 Query 1099 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTCAGATTACCCATTTATGATGCAG 1158 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1149 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTTAGATTACCTATTTATGATGCAG 1208 Query 1159 ACTTTGGTTGGGGTCGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1218 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1209 ACTTTGGTTGGGGTCGTCCTATCTTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1268 Query 1219 CGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCCTATCCGTGGCCATTGCCCTCCAAT 1278 | |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| Sbjct 1269 CTTTTGTGCTACCAAGTCCTACTAATGATGGCAGCTTATCCGTTGCCATTGCCCTCCAAT 1328 Query 1279 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTACGAGATATGAGAGAGATAAGC 1333 ||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct 1329 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTTTGAGATATGAGAGCGTTAAGC 1383 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66063917220 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5