BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924226
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54740.1 | Symbols: | Protein of unknown function (DUF3049)... 928 0.0
> AT1G54740.1 | Symbols: | Protein of unknown function (DUF3049)
| chr1:20430769-20431986 FORWARD LENGTH=1218
Length=1218
Score = 928 bits (502), Expect = 0.0
Identities = 686/772 (89%), Gaps = 24/772 (3%)
Strand=Plus/Plus
Query 1 CTCTCTCTCTTGTTACCAAGATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 CTCTCTCTCTTGTTACCAAGATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCC 110
Query 61 AAACCAACACCAAAACGATGCCGTTTGAATCCGGTCTTGGCCATGACGAG--GC---GA- 114
|||||||||||||| |||||||||||||||||||||||||||||| ||| | |
Sbjct 111 AAACCAACACCAAAGGGATGCCGTTTGAATCCGGTCTTGGCCATGATGAGACACAATCAC 170
Query 115 ATGGTTTAATGTTGTGTACAGAGTATCTAGGGTTCGAGAGTTACGACATGAGAATGTCCG 174
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 171 ATGGCTTAATGTTGTGCACAGAGTATCTAGGGTTTGAGAGTTACGACATGAGGATGTCCG 230
Query 175 ATAACGAGGTGGAGAATAAGATGACTTGTCACGTAGAGGTGGAGACCGAAAGGGTCGAAA 234
|||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||
Sbjct 231 ATAACGAGGTGGAGAACAAGATGACTTGTCATGCGGAGGTGGAGACCGAAAGGGTTGAAG 290
Query 235 CAAAGAGGAGGAAGATGAAGGAGAATGTGGTGGCGCGAGAGC-CGGGAAAAA-AGTTTCC 292
||||||||||||||| ||||||||||||||||| || | ||| | | ||||| |||||||
Sbjct 291 CAAAGAGGAGGAAGACGAAGGAGAATGTGGTGGTGC-A-AGCGCAGAAAAAACAGTTTCC 348
Query 293 TCCGCCTCTCTCGTCGTTGAACGGCCGAGGACAACGGTCTTTTTATCTCCGGCCGGTGAG 352
||||||||||||||| || ||| |||| ||||| || | |||||||||||| ||||||||
Sbjct 349 TCCGCCTCTCTCGTCATTAAACAGCCGTGGACAGCGATATTTTTATCTCCGTCCGGTGAG 408
Query 353 GAAGGATGGTAGATTGGAACTTACGCAAGTAATGATCAATCGACCAGAGATTTTTCATGC 412
|| || ||||||||||||||||||||||| ||| || |||||||||||||||| || |
Sbjct 409 AAAAGACGGTAGATTGGAACTTACGCAAGTTATGGTCGATCGACCAGAGATTTTCCACGT 468
Query 413 TTCTAGAGAAGATGGACGGTTAAGATTACATTTTGTCGATGGTGTCGAGAATCCCATAAG 472
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 469 TTCTAGAGTAGATGGACGGTTGAGATTACATTTTGTCGATGGTGTCGAGAATCCCATTAG 528
Query 473 AGGTTGTTGTGGTCC-CGAAGAAATCGTTGCCTTAGAAGACGAACCTAAGGGTCTAGGTC 531
|| || || |||||| | ||||||| || ||||||||||| ||||||||||||||||||
Sbjct 529 AGCTTATTCTGGTCCTC-AAGAAATTGTGGCCTTAGAAGAGGAACCTAAGGGTCTAGGTA 587
Query 532 ATGAGAACGAGGGAGGGGAGATAAGTAGATCTGATCTGAAATGGGGTACAGAGATTATTG 591
||||||| |||||||||||||| ||||||||||||||| |||| |||| |||||||| ||
Sbjct 588 ATGAGAAAGAGGGAGGGGAGATTAGTAGATCTGATCTGGAATGTGGTAGAGAGATTAATG 647
Query 592 AAGATGACAATGATGGTGCATGTGATGAAGTGG-TGGATTTATCTATGATCA---ATGAT 647
|||| |||||||||||||||||| || ||| | ||||||||||||| |||| |||||
Sbjct 648 AAGACGACAATGATGGTGCATGTAATCAAG-GAATGGATTTATCTATAATCAGTGATGAT 706
Query 648 -GT--TGCAA-AACGTTGGAGATGTAATACTAGTCATGAGGTTTCGGTGAATAGTGATAA 703
|| ||||| || ||||||||||||| | ||||||||| ||||||||||||||| ||||
Sbjct 707 AGTGGTGCAAGAA-GTTGGAGATGTAAAAGTAGTCATGATGTTTCGGTGAATAGTAATAA 765
Query 704 TGATGTTGCACATTTCCATGATGATCATGACACGAGAGAATGGA-GTAACAA 754
|||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 766 TGATGTTGCACATTTCCATGATGACCATGACACGAGAGAATGGATGTA-CAA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5