BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924235
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54780.1 | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa prote... 1522 0.0
> AT1G54780.1 | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa protein
| chr1:20439434-20441159 FORWARD LENGTH=1163
Length=1163
Score = 1522 bits (824), Expect = 0.0
Identities = 926/974 (95%), Gaps = 12/974 (1%)
Strand=Plus/Plus
Query 17 aaaaaTGGAGACCCTtctctcccctcgtgctctctctcctcctctcaact-ccaaaccct 75
|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||
Sbjct 96 AAAAATGGAGACCCTTCTCTCCCCTCGTGCGCTCTCTCCTCCTCTCAA-TCCCAAA-CCT 153
Query 76 ct-tccac-tcACCAGACCAAACCCACTTCACATTCCTTGTCTCTCTCAAAACCCACAAC 133
| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 154 TTGTCC-CTTCACCAGACCAAACCCACTTCACATTCATTGTCTCTCTCAAAACCCACCAC 212
Query 134 CTTCTCCGGTCCTAAACACCTCTCCACCCGGTTTACTAAACCGGAATCAAGAAACTGGTT 193
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 213 CTTCTCCGGTCCTAAACACCTCTCCACCCGGTTCACTAAACCGGAATCAAGAAACTGGTT 272
Query 194 AACAGATGCAAAGCAAGGACTAGCTGCTTTAGCTTTATCTCTAACTCTCAGTTTCTCACC 253
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 273 AATAGATGCAAAGCAAGGACTAGCTGCTTTAGCTTTATCTCTAACTCTCACTTTCTCACC 332
Query 254 TGTTGGCACTGCTTTAGCTTCTGAGTTCAATATCCTCAACGATGGTCCACCAAAAGACAC 313
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 333 TGTTGGCACTGCTTTAGCCTCTGAGTTCAATATCCTCAACGATGGTCCACCTAAAGAAAC 392
Query 314 TTACGTAGTCGACGATGCTGGTGTTCTAAGTCGAGTGACGAAGTCAGATCTTAAAAATCT 373
|||||||||||| || ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 393 TTACGTAGTCGATGACGCTGGTGTTCTTAGTCGAGTGACGAAGTCAGATCTTAAGAAGCT 452
Query 374 TTTGTCTGATCTTGAATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TTTGTCTGATCTTGAATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCT 512
Query 434 CACTAGTAAAGCAGATGCGTTTGAGTATGCAGACCAAGTTTTGGAGAAATGGTATCCTTC 493
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 513 CACCAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTC 572
Query 494 AATTGAAGAAGGTAACAATAAAGGTATTGTTGTTTTGATCACAAGTCAGAAGGAAGGAGC 553
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 573 TATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAAGTCAGAAGGAAGGAGC 632
Query 554 TATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TATTACTGGTGGTCCTGCTTTTATTGAAGCTGTTGGTGAAAACATTCTTGATGCTACCGT 692
Query 614 CTCCGAAAATCTTCCCGTACTAGCAACGGACGAAAAATACAATGAGGCGGTATATAGCAG 673
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 693 CTCCGAAAATCTTCCCGTACTAGCAACGGACGAAAAATACAACGAGGCGGTATATAGCAG 752
Query 674 TGC-AAAATGGTTAGTTGCAGCTATAGACGGTCTACCAGATCCCGGTGGTCCAACAGTAA 732
||| |||| |||| ||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 753 TGCGAAAA-GGTTGGTTGCAGCTATAGACGGTCAACCAGATCCCGGGGGTCCAACCGTAA 811
Query 733 AGGATAGCAAGAGAGAATCAAATTTCAAGACGAAACAAGAAACAGACGAGAAGAGAGGAC 792
||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||||
Sbjct 812 AGGATAGCAAGAGAGAATCAAATTTCAAGACGAAAGAAGAAACCGATGAGAAGCGAGGAC 871
Query 793 AATTCAGTCTTGTCGTTGGAGGATTACTTGTAATTGCCTTTGTAGTTCCCATGGCACAGT 852
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 872 AGTTCAGTCTTGTCGTTGGAGGATTACTTGTAATTGCCTTTGTAGTTCCCATGGCACAAT 931
Query 853 ACTTTGCTTATGTCTCCAGGAAGTAAGTAA--A--CTCGGTTCACTCTCGTAAACCAAAC 908
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 932 ACTTTGCTTATGTCTCCAGGAAGTAAGTAAGTAAACTCGGTTCACTCTCGTAAACCAAAC 991
Query 909 CGATCAGGTCAGAACTTTGTTTTACATCGGTTATTTGGTTATGGTTTCTTGGTGAATTGG 968
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 992 CGATCAGGTCAGAACTTTGATTTACCTCGGTTATTTGGTTATGGTTTCTTGGTAAATTGG 1051
Query 969 TTTATTTGAGCAAT 982
||||||||| ||||
Sbjct 1052 TTTATTTGAACAAT 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5