BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924243
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54850.1 | Symbols: | HSP20-like chaperones superfamily pro... 924 0.0
> AT1G54850.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:20454389-20456220 FORWARD LENGTH=898
Length=898
Score = 924 bits (500), Expect = 0.0
Identities = 603/653 (92%), Gaps = 5/653 (1%)
Strand=Plus/Plus
Query 1 GCCGGCGACTTCTG--AGAT-ATCTCCGATGAGGTCTTCAAGTGGTCAAAATGGGATGAG 57
|||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||
Sbjct 24 GCCGGCGACTTCTGAAACATCGTCTCCGATGAGGTCTTCAAGTGGTCTAAATGGGATGAG 83
Query 58 AGAGAACATGAGTTTTTCGGATAACACAAGGAACCCACAAATTCTTGAAGTGACTCCGTT 117
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 84 GGAAAACAACAGTTTTCCGGATAACACAAGGAACCCACAAATTCTTGAAGTGACTCCATT 143
Query 118 GAACAGTTTGCCTTACATCGGTCCAGTAACTCATGCATCTATGTCGAGTGGCAGGATGAA 177
||||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 144 GAACAGTATGCCTTACATTGGTCCAGTAACTCATGCATCCATGTCGAGTAACAGGATGAA 203
Query 178 TGAGAATGTAGAGAAAGTAGGAGGGCCAGCAATGATATTTCTGCCTTCTGAATCAACTTC 237
||| | ||||||||||||||||||||| || |||||||||||||||||||| |||| |||
Sbjct 204 TGATAGTGTAGAGAAAGTAGGAGGGCCTGCGATGATATTTCTGCCTTCTGACTCAAGTTC 263
Query 238 AGAGTTTTCTAACCTTATCAGTCAAACGAAAACCGGAGTTGCTCTCACGGGAAGTGCAGC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 264 AGAGTTTTCTAACCTTATCAGTCAAACGAAAACCGGAGTTGCTCTCACGGGAAGTGCTGC 323
Query 298 CATGGGGAAGATTGGACCAACGATTGGTTTGGTTGATATTGCTGAATGTGAAGACTCATA 357
|||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 324 AATGGGGAAGATTGGACTAACGATTGGGTTGGTTGATATTGCTGAATCCGAAGACTCATA 383
Query 358 CTACTTTCGTGTTTCATTGCCTGGCGTGTCAAGGGATGAGAAGGACTTCAGCTGCGAAAT 417
|||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 384 TTACTTTCGTGTTGCATTGCCTGGTGTTTCAAGGGATGAGAAGGAATTCAGCTGCGAAAT 443
Query 418 AGAACCGGACGG-AAGGATTCTAATAAAGGGAGCAACAACAACGGGGGAACAGACTGTTT 476
|||||| ||||| || |||| | ||||||||||||||||| |||||||| ||||| ||||
Sbjct 444 AGAACCAGACGGTAA-GATTATGATAAAGGGAGCAACAACGACGGGGGAGCAGACAGTTT 502
Query 477 GCAAACACAATCAGATCTTCAAAATGCTAACACAGAACTTATGCCCACCAGGCCACTTCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GCAAACACAATCAGATCTTCAAAATGCTAACACAGAACTTATGCCCACCAGGCCACTTCA 562
Query 537 CCATCAGCTTCCAGCTTCCAGGTCCTGTGAGCAATGAAGAATTCAATGGTAATTTTGGGT 596
|||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 563 CCATCAACTTTCAGCTTCCTGGTCCTGTGAGCAATGAAGAATTTAACGGTAATTTTGGGT 622
Query 597 CAGATGGTGTACTTGAGGGCGTAGTGAAGAAGCTGTACTACGAAGATTGAACA 649
|||||||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 623 CAGATGGTGTACTTGAAGGCGTAGTGAAGAAGGTGTACTACGAAGACTGAACA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5