BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924342
Length=3226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56500.1 | Symbols: | haloacid dehalogenase-like hydrolase ... 5072 0.0
> AT1G56500.1 | Symbols: | haloacid dehalogenase-like hydrolase
family protein | chr1:21159744-21167321 FORWARD LENGTH=3428
Length=3428
Score = 5072 bits (2746), Expect = 0.0
Identities = 3069/3226 (95%), Gaps = 17/3226 (1%)
Strand=Plus/Plus
Query 5 aaaaaaaaaaaatcaaagcaaaaaaaTGGCTTTGAAACTCACTTCTCCGCCTTCAATTTT 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 7 AAAAAAAAAAAACCAAAGCAAAAAAATGGCTTTGAAACTCACTTCTCCGCCTTCAGTTTT 66
Query 65 CTCACAATCAAGGAGATTATCTTCTTCTTCAATTCCAA-TAAGATCAAAATCCACATCAA 123
|||||||||||||||||||||||||||||| || || | ||| || | || | ||
Sbjct 67 CTCACAATCAAGGAGATTATCTTCTTCTTC-GTT--AATTCCGAT-AAGGT-CA-A--AA 118
Query 124 GACCATCTTCATTCACCGGATTTCGCTCCAAAACCGGAGTTTATCTAACCAAAACG-C-- 180
||| |||||||||||||||| || | |||||| |||||| ||| ||||||| |
Sbjct 119 -TCCA----CATTCACCGGATTTCGATCGAGAACCGGTGTTTATTTAAGCAAAACGACGG 173
Query 181 CGCTTCCGTCATCTACTAAATTGAATGTGGCGGCGGAGAGTCCTCCGGCGACAATTGCGA 240
|||||| ||| ||||| ||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 174 CGCTTCAGTCGTCTACAAAACTGAGTGTGGCGGCGGAGAGTCCTGCGGCGACAATTGCGA 233
Query 241 CGGAGGATTGGGGGAAAGTATCAGCGGTGCTATTCGATATGGACGGTGTGCTTTGTAATA 300
|||| ||||||||||||||||| ||||| || || ||||||||||||||||||||||| |
Sbjct 234 CGGATGATTGGGGGAAAGTATCGGCGGTTCTGTTTGATATGGACGGTGTGCTTTGTAACA 293
Query 301 GTGAAGATCTTTCTAGACGCGCCGCCGTTGATGTTTTTGCTGAGATGGGAGTTGAAGTCA 360
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 294 GTGAAGATCTTTCTAGACGCGCCGCCGTGGATGTTTTTACGGAGATGGGAGTTGAAGTCA 353
Query 361 CTGTGGATGATTTCGTTCCTTTTATGGGAACAGGTGAAGCCAAGTTTTTAGGAGGTGTTG 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CTGTGGACGATTTCGTTCCTTTTATGGGAACAGGTGAAGCCAAGTTTTTAGGAGGTGTTG 413
Query 421 CTTCAGTCAAAGAAGTAAAAGGATTTGATCCAGATGCAGCTAAAAAGAGATTCTTTGAAA 480
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 414 CTTCAGTCAAAGAAGTTAAAGGATTTGATCCAGATGCAGCTAAAGAGAGATTCTTTGAAA 473
Query 481 TATATCTCGATAAGTACGCGAAGCCAGAATCTGGGATTGGATTTCCGGGAGCATTGGAGC 540
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 474 TATATCTCGATAAGTATGCGAAGCCAGAATCTGGGATTGGATTTCCAGGAGCATTGGAGC 533
Query 541 TTGTTACTGAGTGTAAGAACAAAGGTCTTAAAGTTGCGGTTGCATCTAGTGCTGACCGTA 600
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 534 TTGTTACTGAGTGTAAGAACAAAGGCCTTAAAGTCGCTGTTGCATCTAGTGCTGACCGTA 593
Query 601 TTAAAGTTGATGCGAATCTGAAAGCTGCTGGTTTGTCTTTGACCATGTTTGATGCCATTG 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TCAAAGTTGATGCGAATCTGAAAGCTGCTGGTTTGTCTTTGACCATGTTTGATGCCATTG 653
Query 661 TTTCAGCAGACGCTTTTGAGAATTTGAAACCAGCTCCAGATATTTTCTTGGCTGCTGCAA 720
|||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 654 TTTCAGCAGATGCCTTTGAGAATTTGAAACCAGCTCCAGATATTTTCCTGGCTGCTGCAA 713
Query 721 AGATATTGGGTGTGCCGACAAGCGAGTGTGTTGTTATTGAAGATGCGCTTGCTGGAGTCC 780
|||| || |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AGATCTTAGGTGTGCCTACCAGCGAGTGTGTTGTTATTGAAGATGCGCTTGCTGGAGTCC 773
Query 781 AAGCCGCCCAAGCTGCGAACATGAGATGTATAGCTGTAAAAACTACTTTATCTGAAGCAA 840
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 774 AAGCCGCACAAGCTGCGAACATGAGATGTATAGCCGTAAAAACTACTTTATCTGAAGCAA 833
Query 841 TTCTTAAGGACGCTGGTCCGTCAATGATCCGAGACGATATTGGAAACATTTCAATCAGTG 900
|||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||| ||
Sbjct 834 TTCTTAAGGATGCTGGTCCTTCTATGATACGAGACGATATTGGAAACATCTCAATCAATG 893
Query 901 ACATTCTCTCTGGTGGCTCAGATTCTACCAGAAATTCCACAGCAATACTTGAAGAGAACA 960
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 894 ACATTCTCACTGGTGGCTCAGATTCTACCAGAAATTCCACAGCAATGCTTGAAGAGAACA 953
Query 961 CAGCCAGCGACAAAACCAGCGCTAACGGGTTTCAGGGCTCCCGACGAGATATACTGAGGT 1020
| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 954 CGGTCAGCGACAAAACCAGCGCTAACGGGTTTCAGGGCTCTCGACGAGATATACTGAGGT 1013
Query 1021 ACGGGAGTCTTGGCATTGCTCTTTCTTGTGTCTACTTTGCCGCCACCAACTGGAAGGCAA 1080
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1014 ATGGGAGTCTTGGCATTGCTCTTTCTTGTGTCTACTTCGCCGCCACCAACTGGAAGGCAA 1073
Query 1081 TGCAATATGCTTCTCCGAAAGCTTTGTGGAATGCATTGGTTGGAGCCAAAAGCCCTTCTT 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1074 TGCAATATGCTTCTCCGAAAGCTTTGTGGAATGCATTGGTTGGAGCAAAAAGCCCTTCTT 1133
Query 1141 TTACACAGAACCAAGGTGAAGGGAGAGTGCAACAGTTTGTCGATTACATTGCTGATCTAG 1200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1134 TTACACAGAACCAAGGTGAAGGGAGAGTGCAACAGTTCGTCGATTACATTGCTGATCTAG 1193
Query 1201 AGAGCAAGCAAACAGCTACAGCTGTGCCAGAATTCCCGTCTAAACTCGACTGGCTGAACA 1260
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 1194 AGAGCAAGCAAACAGCTACAACTGTGCCAGAATTCCCATCTAAACTCGACTGGCTAAACA 1253
Query 1261 CTGCCCCTCTCCAGTTTCGCCGGGATTTAAAAGGGAAAGTGGTTATACTTGATTTTTGGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CTGCCCCTCTCCAGTTTCGCCGGGATTTAAAAGGGAAAGTGGTTATACTTGATTTTTGGA 1313
Query 1321 CCTATTGCTGCATAAACTGTATGCATGTATTACCGGATCTAGCGTTTCTTGAGAAGAAGT 1380
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1314 CCTATTGCTGCATAAACTGTATGCATGTATTACCGGATCTAGAGTTTCTTGAGAAGAAGT 1373
Query 1381 ACAAGGATATGCCATTCACCGTTGTGGGTGTACACTCGGCTAAGTTCGACAATGAGAAGG 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1374 ACAAGGATATGCCATTCACCGTTGTGGGTGTACACTCGGCTAAGTTCGACAATGAGAAAG 1433
Query 1441 ATTTCGATGCCATACGAAATGCAGTTCTACGCTATGATATTAGCCACCCGGTTGTGAACG 1500
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1434 ATTTAGATGCCATACGAAATGCAGTTCTTCGCTATGATATTAGCCACCCGGTTGTGAATG 1493
Query 1501 ATGGAGACATGTATATGTGGAGAGAGCTCGGCATCAACTCGTGGCCTACATTTGCTGTTG 1560
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1494 ATGGAGACATGTACATGTGGAGAGAGCTTGGCATCAACTCGTGGCCTACATTTGCTGTTG 1553
Query 1561 TTTCTCCAAATGGCAAAGTCATTGCACAAATCGCCGGAGAAGGTCACCGCAAAGATCTTG 1620
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1554 TTTCTCCTAATGGCAAAGTCATTGCACAAATTGCCGGAGAAGGTCACCGCAAAGATCTTG 1613
Query 1621 ATGACTTGGTGGCGGCAGCTCTGACGTATTATGGTGGAAAGAATGTATTAGACAGTACTC 1680
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1614 ATGACGTGGTGGCGGCAGCTCTGACATATTATGGTGGAAAGAATGTATTAGACAGTACTC 1673
Query 1681 CGCTTCCAACACGTTTGGAGAAAGACAACGATCCACGTTTGGCCACGTCTCCATTGAAAT 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1674 CGCTTCCAACACGTTTGGAGAAAGACAACGATCCACGTTTGGCCACGTCTCCGTTGAAAT 1733
Query 1741 TTCCGGGGAAGTTGGCTATTGATACTCTTAATAACAGGCTATTCATCTCAGACAGTAACC 1800
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 TTCCGGGAAAGTTGGCTATTGATACTCTTAATAACAGGCTATTCATCTCAGACAGTAACC 1793
Query 1801 ATAACCGTATTATTGTAACTGATCTTGAAGGAAATTTCATCGTCCAAATCGGTAGCACTG 1860
||||||||||||||||||||||||| |||||||||||||| |||||||| || |||| ||
Sbjct 1794 ATAACCGTATTATTGTAACTGATCTCGAAGGAAATTTCATAGTCCAAATTGGCAGCAGTG 1853
Query 1861 GAGAAGAAGGTTTCCAAGATGGTTCCTTTGAAGATGCTGCATTCAATCGTCCTCAGGGAC 1920
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1854 GAGAAGAAGGTTTCCAAGATGGTTCCTTCGAAGATGCTGCATTTAATCGTCCTCAGGGAC 1913
Query 1921 TTGCTTATAATGCTAAGAAGAATCTTCTTTATGTTGCTGACACCGAGAATCATGCTTTGA 1980
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TAGCTTATAATGCTAAGAAGAATCTTCTTTATGTTGCTGACACCGAGAATCATGCTTTGA 1973
Query 1981 GAGAGATTGATTTTGTCAACGAGAGAGTGCGGACTTTGGCTGGTAATGGAACTAAAGGCT 2040
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 1974 GAGAGATTGATTTTGTCAACGAGAGAGTACAGACTCTGGCTGGTAATGGAACTAAAGGCT 2033
Query 2041 CAGACTACCAAGGTGGAAGAAAAGGAACCAAACAGCTTTTGAATTCTCCTTGGGACGTAT 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 CAGACTACCAAGGTGGAAGAAAAGGAACCAAACAGCTTTTGAATTCTCCTTGGGACGTAT 2093
Query 2101 GCTTTGAGCCGGTGAATGAGAAGGTATACGTTGCAATGGCAGGTCAGCACCAGATTTGGG 2160
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2094 GCTTTGAGCCGGTGAATGAGAAGGTATACATTGCAATGGCAGGTCAGCACCAGATTTGGG 2153
Query 2161 AGTACAATGTGCTTGATGGTATTACTCGAGTTTTCAGTGGAAACGGCTATGAAAGAAACC 2220
| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2154 AATACAGTGTGCTTGATGGTATTACTCGAGTTTTCAGTGGAAATGGTTATGAAAGAAACC 2213
Query 2221 TCAATGGTTCTACCCCTCAGACTACATCGTTTGCTCAGCCATCGGGAATCTCATTAGGCC 2280
|||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2214 TCAACGGTTCCACCCCTCAGACTACATCATTTGCTCAGCCATCAGGAATCTCATTAGGCC 2273
Query 2281 CTGATTTGAAGGAAGCATATATTGCTGATAGCGAGAGCAGTTCTATTCGTGCCCTTGATC 2340
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 CTGATTTGAAAGAAGCATATATTGCTGATAGCGAGAGCAGTTCTATTCGTGCCCTTGATC 2333
Query 2341 TTCAAACTGGAGGATCAAGATTGCTTGCTGGTGGTGATCCGTATTTCTCTGAGAATCTTT 2400
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2334 TTCAAACTGGAGGATCAAGATTACTTGCGGGTGGTGATCCGTATTTCTCTGAGAATCTTT 2393
Query 2401 TCAAGTTTGGAGACAATGATGGTGTGGGTGCAGAAGTTCTCCTACAACACCCGTTAGGTG 2460
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 2394 TCAAGTTTGGAGACAATGATGGCGTGGGAGCAGAAGTTCTCCTACAACACCCGCTAGGTG 2453
Query 2461 TATTATGCGCAAAGGATGGTCAAATATATCTAACTGATAGCTATAACCACAAGATTAAGA 2520
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 TATTATGCGCAAATGATGGTCAAATATATCTAACTGATAGCTATAACCACAAGATTAAGA 2513
Query 2521 AGCTGGACCCTGTAACCAAACGTGTTGTTACTGTCGCTGGAACGGGAAAAGCCGGTTTCA 2580
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 2514 AGTTGGACCCTGTAACCAAACGTGTTGTTACTCTCGCTGGAACGGGAAAAGCCGGTTTTA 2573
Query 2581 AGGATGGGAAGGTCAAGGGTGCTCAGCTTTCAGAGCCTGCAGGACTTGCTATAACTGAAA 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 AGGATGGGAAGGTCAAGGGTGCTCAGCTTTCAGAGCCTGCAGGACTTGCTATAACTGAAA 2633
Query 2641 ACAAGAGGCTGTTTGTGGCGGACACAAATAATAGCCTTATCCGATACATAGATTTGAACA 2700
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2634 ACGGGAGGCTGTTTGTGGCGGATACAAATAATAGCCTTATCCGATACATAGATTTGAACA 2693
Query 2701 AAGGAGAAGACGCAGAGATTCTTACATTGGAGTTAAAAGGTGTTCAACCGCCAATGCCAA 2760
||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 2694 AAGGAGAAGACTCAGAGATTCTTACATTGGAGTTAAAAGGTGTTCAACCACCAACGCCAA 2753
Query 2761 AGGCAAAATCCTTGAAACGTTTGAGAAAACGTGCCTCGGCTGATACAAAGATTGTCAAAG 2820
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2754 AGGCAAAATCCCTGAAACGTTTGAGAAAACGTGCCTCGGCTGATACAAAGATTGTCAAAG 2813
Query 2821 TGGATTCAGTTACGTCACGCGAAGGAGATTTAAATCTCAAAATCTCATTACCTGATGGCT 2880
||||||| || ||||| || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 2814 TGGATTCTGTAACGTCCCGTGAAGGAGATTTGAATCTCAAAATCTCATTACCAGATGGCT 2873
Query 2881 ACCATTTCTCCAAGGAAGCGCGGAGTAAGTTTGTGGTAGATGTGGAGCCTGAAAACGCAG 2940
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2874 ACCATTTCTCCAAGGAAGCGCGGAGTAAGTTTGTGGTTGATGTGGAGCCTGAAAACGCAG 2933
Query 2941 TAGCAATCGATCCAATGGAAGGAAATCTCAGTCCCGAAGGTTCAACGATGCTTCATTTTA 3000
||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 2934 TAGCAATCGATCCAACGGAAGGAACTCTGAGTCCCGAAGGTTCAACAATGCTTCATTTTA 2993
Query 3001 AACAATCTTTAACTTCGGCTTCTTTTGGGAAAATCAGTTGCAAGGTGTACTATTGCAAAG 3060
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2994 TACAATCTTCAACTTCGGCTTCTGTTGGGAAAATCAGTTGCAAGGTGTACTATTGCAAAG 3053
Query 3061 AAGACGAGGTTTGCTTGTATCAGTCCGTACAGTTTGAGGTCCCTTTCAAGGTGGAATCAG 3120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3054 AAGACGAGGTTTGCTTGTATCAGTCTGTACAGTTTGAGGTCCCTTTCAAGGTGGAATCAG 3113
Query 3121 AATCATCTGCTTCTCCGACAATCACATTCACCGTTAAACCGAGAGCACCCGATGCCGGTG 3180
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 3114 AATTATCTGCTTCTCCGACAATCACATTCACGGTTACACCGAGAGCACCCGATGCTGGTG 3173
Query 3181 GATTACAGCTTCAAGCTACTCGCTGAACCAAATGATCATGATATGA 3226
| ||||||||||||| |||||||||||||| |||| | || |||||
Sbjct 3174 GGTTACAGCTTCAAGGTACTCGCTGAACCACATGACCGTGGTATGA 3219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160484050657
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5