BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924398
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57620.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1062 0.0
> AT1G57620.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr1:21342721-21344804 FORWARD LENGTH=1004
Length=1004
Score = 1062 bits (575), Expect = 0.0
Identities = 628/654 (96%), Gaps = 1/654 (0%)
Strand=Plus/Plus
Query 10 aaaaaGCATCGATGAAGAAGAAGATGATTCCGACGACGCTCTTACTCTCAGCTCTCATTT 69
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 133 AAAAATC-TCGATGAAGAAGAAGATGATTCCGACGACGATCTTACTCTCAGCTCTCATTT 191
Query 70 TCTCTTTATCGCCGATCTGTGAAGCTGTGTGGCTTACCGTACCTCACACTGGATCAAAGT 129
||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 192 TCTCTCTATCACCGATCTGTGAAGCTGTGTGGCTTACTGTACCTCACACCGGATCAAAGT 251
Query 130 GTGTCTCTGAAGAAATCCAAAGCAACGTCGTCGTTTTAGCTGATTACCTTGTTATCTCCG 189
| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 252 GCGTCTCCGAAGAAATCCAAAGCAACGTCATCGTTTTAGCTGATTACCTTGTTATCTCCG 311
Query 190 AGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTCACAGCACCTTATGGCAGCGTTT 249
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct 312 AGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGGTTACAGCACCTTATGGCACCGTGT 371
Query 250 TACACCACAAGGAAAATACAACAAACGGTCAGTTTGCATTTACAACCCAAGAATCAGGAA 309
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 372 TACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAA 431
Query 310 CCTACTTGGCCTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAGAGATTTTAGCATCA 369
| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 432 CTTACTTGGCGTGTTTTGAGGCCGATGCTAAAAGTCATGGTAACAAAGATTTTAGCATCA 491
Query 370 ACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 ACATCGACTGGAAAACTGGAATCGCAGCTAAAGATTGGGACTCCATTGCTAGAAAAGAAA 551
Query 430 AGATCGAGGGTGTAGAGCTAGAGCTTAAGAAACTTGAAGGTGCAGTAGAAGCCATACATG 489
||||||||||||||||||| ||| |||||||||||||||||||||| ||||| || ||||
Sbjct 552 AGATCGAGGGTGTAGAGCTGGAGTTTAAGAAACTTGAAGGTGCAGTTGAAGCAATCCATG 611
Query 490 AAAATTTAATTTACCTCAGAAACAGAGAAGCAGAAATGAGGATTGTGAGTGAAAAAACAA 549
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 612 AAAATCTGATTTACCTCAGAAACAGAGAAGCAGAGATGAGGATTGTGAGTGAAAAAACAA 671
Query 550 ACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ACTCGAGAGTCGCATGGTACAGTATAATGTCGCTGGGGATTTGCATTGTGGTCTCTGGTT 731
Query 610 TACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAGATCA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TACAGATTTTGTACTTGAAGCAATACTTTGAAAAGAAGAAGCTTATTTAGATCA 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5