BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924442
Length=1192
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64720.1 | Symbols: CP5 | Polyketide cyclase/dehydrase and l... 1677 0.0
> AT1G64720.1 | Symbols: CP5 | Polyketide cyclase/dehydrase and
lipid transport superfamily protein | chr1:24046553-24048622
REVERSE LENGTH=1577
Length=1577
Score = 1677 bits (908), Expect = 0.0
Identities = 1075/1152 (93%), Gaps = 25/1152 (2%)
Strand=Plus/Plus
Query 53 CCTCGGCTTCTCTGACCTTTTAGTATTTGTTGCGCCACTCTGGATTGCTGTCGCTGCCGG 112
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 127 CCTCGGCTTCTCTGACCTTATAGTTTTTGTTGCGCCACTCTGGATTGCTGTGGCTGCCGG 186
Query 113 GGTTTTGGTTGGTTGGTTTTGGAGACCCAAGTGGGCTTATCTCGACACAAAACCCTTCTT 172
||||||||||||||| ||||||| |||||||||||||||||||| | ||| | ||||
Sbjct 187 TGTTTTGGTTGGTTGGGTTTGGAGGCCCAAGTGGGCTTATCTCGATTCTAAA--C-TCTT 243
Query 173 ATCCGATTCTTCACCTAAATT-CT---TC--AAGCTTCCCACTTCCATCCTCAAGACCTC 226
||| | |||||||||||| || || |||||||||||||||||||||| || ||
Sbjct 244 GTCC-A--ATTCACCTAAATTCCTCAATCTTCAGCTTCCCACTTCCATCCTCAAAACTTC 300
Query 227 TTCTCACAGCCTTTC-TTCTCCCCAGGC-TGATGAGAAAGAGAAATCTGGGTTTGTTACG 284
|||| || || | || |||||| | | | ||||||||| |||||||||| |||
Sbjct 301 TTCT--CA-CC--ACGTTAACCCCAGCCTTTCTTCCAAAGAGAAAACTGGGTTTGTAACG 355
Query 285 GACGATGATTTTAGGCATCTATGGAAGTTGGTTGAGGTCAAAGATGGCGG-CCCTGCTTG 343
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 356 GACGATGATTTTAGGCATCTATGGAAGTTGGTTGAGGTCAAAGATGGCGGTCCTTG-TTG 414
Query 344 GATTCAGATGATGGACCGATCAACTCCTACCTTCTCATATCAAGCTTGGAGGCGAGATCC 403
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 415 GATTCAAATGATGGACCGATCAACCCCAACCTTCTCATATCAAGCTTGGAGGCGAGATCC 474
Query 404 TGAGAATGGGCCTCCCCAGTACCGTAGCAGAACTGTGTTTGAGGATGCCACTCCCGAGAT 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGAGAATGGGCCTCCCCAGTACCGTAGCAGAACTGTGTTTGAGGATGCCACTCCCGAGAT 534
Query 464 GGTGAGGGACTTCTTTTGGGATGATGAGTTCCGTTCCAAGTGGGATGATATGCTTTTGTA 523
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GGTCAGGGACTTCTTTTGGGATGATGAGTTCCGTTCCAAGTGGGATGATATGCTTTTGTA 594
Query 524 TTCTTCTACTCTCGAGCGTTGCAA-GAGCACGGGCACTATGGTTGTGCAATGGGTGCGCA 582
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 595 TTCTTCTACTCTCGAGCGTTGCAAGGA-CACGGGCACTATGGTTGTGCAATGGGTGCGAA 653
Query 583 AGTTCCCTTTCTTTTGTAGCGACAGGGAGTATATTATAGGCCGTCGAATATGGGATGCTG 642
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 654 AGTTCCCCTTCTTTTGTAGCGACAGGGAGTATATTATAGGCCGTCGTATATGGGATGCTG 713
Query 643 GCCGAGTCTTTTACTGCGTTACAAAGGGAGTACAATACCCGTCTGTACCTAGACAAAACA 702
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 714 GCCGAGTCTTTTACTGCATTACTAAGGGAGTACAATACCCGTCTGTACCTAGACAAAACA 773
Query 703 AGCCAAGGCGAGTCGACTTATACTATTCAAGCTGGTGTATCCGTGCAGTTGAATCAAAAA 762
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGCCAAGGCGAGTCGACTTGTACTATTCAAGCTGGTGTATCCGTGCAGTTGAATCAAAAA 833
Query 763 GAGGCGATGGTGAGATGACATCATGTGAGGTACTACTATTTCACCATGAAGATATGGGAA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GAGGCGATGGTGAGATGACATCATGTGAGGTACTACTATTTCACCATGAAGATATGGGAA 893
Query 823 TACCGTGGGAGATTGCAAAGCTCGGGGTGAGACAGGGGATGTGGGGTGCAGTGAAGAAAA 882
|||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
Sbjct 894 TACCGTGGGAGATTGCAAAGCTTGGGGTGAGACAGGGTATGTGGGGTGCAGTCAAGAAGA 953
Query 883 TTGAGCCAGGCCTACGTGCATATCAGAGGGCCAAAGCAGCGGGAGCAGGTTTATCCCCAA 942
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 954 TTGAGCCAGGCCTACGTGCATATCAGAGGGCTAAAGCAGCGGGAGCAGGTTTATCCCCGA 1013
Query 943 GTGCCATAATGGCTCACATCAACACCAAAGTGAGTGCAGAGGAGTTCATGAATGAGAGGG 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTGCCATAATGGCTCACATCAACACCAAAGTGAGTGCAGAGGAGTTCATGAATGAGAGGG 1073
Query 1003 ATTCGATAGCAGAGATTACTGGAGAGAAGCCGACAGGGAAAAACATACCAAAGATACTAG 1062
||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1074 GTTCGATAGCAGAGGTTACAGGAGACAAGCCGACGGGGAAAAACATACCAAAGATACTAG 1133
Query 1063 TGGTGGGAGGGGCGATTGCCCTTGCATGTACACTGGACAAAGGGCTGTTGACAAAGGCAG 1122
|||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1134 TGGTAGGAGGGGCGATTGCACTTGCATGTACATTGGACAAAGGGCTGTTGACAAAGGCGG 1193
Query 1123 TGATATTCGGAGTAGCCAGAAGATTTGCAAGAATGGGGAAAAGGATGTAGGAGAG--TGT 1180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1194 TGATATTCGGAGTAGCCAGAAGATTTGCAAGAATGGGAAAAAGGATGTAGGAGAGAGTGT 1253
Query 1181 ACATGTAAGTAG 1192
||||||||||||
Sbjct 1254 ACATGTAAGTAG 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58533835470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5