BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924675

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing pr...   496    1e-139


> AT5G33406.1 | Symbols:  | hAT dimerisation domain-containing 
protein / transposase-related | chr5:12676055-12678403 REVERSE 
LENGTH=1601
Length=1601

 Score =  496 bits (268),  Expect = 1e-139
 Identities = 408/472 (86%), Gaps = 24/472 (5%)
 Strand=Plus/Plus

Query  1     TTGAATCAATCTCAG-TTGAACGACATGGTATTTGTGAAATACAATCGCGCTCTACAACG  59
             |||| ||||| || | |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct  787   TTGACTCAATGTC-GATTGAACGACATGATATTTGTGAAATACAATCGCGCTCTGCAACG  845

Query  60    TCGATACAAGAGGAAA-GACACCGTCGATCCTATTGTGTTGGATGAAATTGATGAATGCA  118
             ||||||||||| |||| |||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct  846   TCGATACAAGA-GAAATGACACCTTCGATCCTATTTTGTTGAATGAAATTGATCAATGCA  904

Query  119   ATGAGTGGCTGACTGGGACAAT----G-G-A---ATCTGATAATG--AA-GATGATCTTG  166
             |||||||||||||||||| |||    | | |   |||||||| ||  || ||||||||||
Sbjct  905   ATGAGTGGCTGACTGGGAGAATGGAGGAGAACTCATCTGATACTGAAAATGATGATCTTG  964

Query  167   TGTTTGAAGATGATAACTTGACATGGAATGTAGTTGGTGAGGCCGTAGGTGCTAATGATC  226
             |||||||| ||||| |||||||||||  || |||||| ||||||| ||| ||||||||||
Sbjct  965   TGTTTGAAAATGATGACTTGACATGGGCTGAAGTTGGCGAGGCCGCAGGAGCTAATGATC  1024

Query  227   CTTATTATGCAACTAGATCGGCTGCTGCTTCAAGTAGAATTGAAAAAGGAAAAGGCGTTG  286
             |||||||||||||||||||  | ||||||||||||||| |||| |||||||||||  |||
Sbjct  1025  CTTATTATGCAACTAGATCAACAGCTGCTTCAAGTAGATTTGAGAAAGGAAAAGGTATTG  1084

Query  287   CTACTGATTCTGGTGGACATGGTCGTTCCAA-AGCATCTCGCAGGCCATC-ATCTACTTC  344
             ||| |||||||||||||||||||  ||| || ||||||||||| | || | |  || |||
Sbjct  1085  CTAGTGATTCTGGTGGACATGGTAATTC-AAGAGCATCTCGCAAGACACCTAA-TAGTTC  1142

Query  345   TAGTCCTATGACTTTGGTTGATGATGATGAAGAGATGGAAGAGGATTT-CATTGGACCAG  403
             | |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| |||
Sbjct  1143  TCGTCCTATGACTTTGGTTGATGAGGATGAAGAGATGGAAGATGATTTTC-TTGGAGCAG  1201

Query  404   AGTTTGAGGATACGCTTTTGGACAAGGATGATTATGAGTAT-GATGATTCTG  454
             ||| |||||| || ||||||||||||||||||||||||| | ||||||||||
Sbjct  1202  AGTATGAGGACACTCTTTTGGACAAGGATGATTATGAGT-TCGATGATTCTG  1252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5