BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924694
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62960.1 | Symbols: ACS10 | ACC synthase 10 | chr1:23318187-... 2900 0.0
> AT1G62960.1 | Symbols: ACS10 | ACC synthase 10 | chr1:23318187-23320316
REVERSE LENGTH=1845
Length=1845
Score = 2900 bits (1570), Expect = 0.0
Identities = 1673/1724 (97%), Gaps = 2/1724 (0%)
Strand=Plus/Plus
Query 2 TTATTAACCTAAAAACATGAGTTCACTACAATGACCCGTACCGAACCAAACCGGAGCCGG 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TTATTTACCTAAAAACATGAGTTCACTACAATGACCCGTACCGAACCAAACCGGAGCCGG 117
Query 62 AGCTCCAATTCAGATTCCGATAAGAATTCCGGTAACGGCGGCGGAGGTAGAACCACCGCG 121
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 118 AGCTCCAATTCCGATTCCGATAAGAATTCCGGTAACGTCGGCGGAGGTAGAACCACCGGG 177
Query 122 ATGAGGGTTATTGTTCCGTTACAAGGTGTGGTACAAGGTCGTGGTGGTTTATTCTTGGGC 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 178 ATGAGGGTTATTGTTCCGTTACAAGGTGTGGTACAAGGTCGTGGTGGTTTATTCTTAGGC 237
Query 182 TCTGTTATTCCTTGTGCTTTCTTCTACTTTCTCCAGTTTTACCTAAAACGAAATCGGAAA 241
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 238 TCTGTGATTCCTTGTGCTTTCTTCTACTTTCTTCAGTTTTACCTAAAACGAAATCGTAAA 297
Query 242 AACGACGAATCCGATAATTCCGGTGAACAAAACTCCTCAGcttcttcttcttcttctCCA 301
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACGACGAATCAGATAATTCCGGTGAACAAAACTCCTCAGCTTCTTCTTCTTCTTCTCCT 357
Query 302 AATTCGGGTTTACCGGATCCGACCCGGTCACAATCCGCTGGTCATCTCACGGAGCTTACT 361
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATTCGGGTTTACCGGATCCCACCCGGTCACAATCCGCTGGTCATCTCACGGAGCTTACT 417
Query 362 GGTTTACCTCGTTCTCTTTCTCGGATTCTTCTCTCGCCGAGAAATTCCGGTGGAGCTGTT 421
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 418 GGTTTACCTCGTTCTCTCTCTCGTATTCTCCTCTCGCCGAGAAATTCCGGTGGAGCTGTT 477
Query 422 TCGGTTTCGGGTCGGGTTAATTGTGTACTCAAAGGTGGAGATTCTTCGCCTTACTACGTT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCGGTTTCGGGTCGGGTTAATTGTGTACTCAAAGGTGGAGATTCTTCGCCTTACTACGTT 537
Query 482 GGTCAAAAACGGGTCGAGGAAGATCCGTATGATGAGTTGGGTAACCCGGACGGAGTTATC 541
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTCAAAAACGGGTCGAGGATGATCCGTATGATGAGTTGGGTAACCCGGACGGAGTTATC 597
Query 542 CAACTTGGTTTAGCTCAAAACACCAAGTTGAGTTTGGATGATTGGGTTTTGGAGAATCCA 601
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 598 CAACTTGGTTTAGCTCAAAACAACAAGTTGAGTTTGGATGATTGGGTTTTAGAGAATCCA 657
Query 602 AAAGAAGCAATTTCAGATGGATTGAGTATTAGTGGCATTGCTTCTTATGAGCCTTCTGAT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAGAAGCAATTTCAGATGGATTGAGTATTAGTGGCATTGCTTCTTATGAGCCTTCTGAT 717
Query 662 GGACTTTTGGAACTGAAAATGGCTGTGGCAGGATTTATGTCTGAAGCAACCAAAAATTCG 721
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 718 GGACTTTTGGAACTGAAAATGGCTGTGGCAGGATTTATGACTGAAGCTACCAAAAACTCG 777
Query 722 GTGTCTTTCGATCCATCACAGTTAGTGTTAACTTCTGGTGCATCATCTGCTATTGAGATT 781
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGACTTTTGATCCATCACAGTTAGTGTTAACTTCTGGTGCATCATCTGCTATTGAGATT 837
Query 782 CTTTCCTTCTGCTTAGCTGATTCGGGAAACGCCTTCCTTGTTCCAACTCCGTGTTCCCCC 841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 CTTTCCTTCTGCTTAGCTGATTCGGGAAACGCCTTCCTTGTTCCAACTCCGTGTTCTCCC 897
Query 842 GGATATGATAGGGATGTTAAATGGCGAACAGGAGTTGACATTATACACGTTCCTTGTAGA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 GGATATGATAGGGATGTTAAATGGCGAACAGGAGTTGACATTATACACGTTCCATGTAGA 957
Query 902 AGTGCGGATAATTTCAATATGTCGATGGTCGTGCTTGATCGAGCATTCTATCAAGCCAAG 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 AGTGCGGATAATTTCAATATGTCGATGGTCGTGCTTGATCGAGCATTCTATCAAGCTAAG 1017
Query 962 AAACGAGGTGTCAGAATCCGTGGCATTATAATCTCGAATCCTTCGAATCCCATGGGAAGC 1021
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1018 AAACGAGGTGTAAGAATCCGCGGCATTATAATCTCGAATCCTTCAAATCCCATGGGAAGC 1077
Query 1022 CTACTGAGCAGAGAGAATCTCTATGCGCTTTTGGACTTTGCCCGTGAGAGGAACATTCAT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTACTGAGCAGAGAGAATCTCTATGCGCTTTTGGACTTTGCCCGTGAGAGGAACATTCAT 1137
Query 1082 ATAATCTCAAACGAAATCTTCGCTGGGTCAGTCCACGGAGAAGAAGGAGAGTTTGTTAGC 1141
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ATTATATCAAACGAAATCTTTGCTGGGTCAGTCCACGGAGAAGAAGGAGAGTTTGTTAGC 1197
Query 1142 ATGGCTGAAATAGTTGACACGGAAGAGAATATCGACAGAGAAAGAGTTCATATCGTGTAT 1201
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 ATGGCTGAAATAGTTGACACGGAAGAGAATATCGACAGGGAAAGAGTTCATATCGTGTAT 1257
Query 1202 GACCTCTCGAAAGACTTGTCTTTCCCGGGACTTAGATCCGCTGCTATCTACTCGTTCAAC 1261
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1258 GACCTTTCGAAAGACTTGTCTTTCCGGGGGCTTAGATCCGCTGCTATCTACTCGTTCAAC 1317
Query 1262 GAAAGTGTTTTATCCGCTTCAAGAAAGCTCACGACGCTCTCACCTGTCTCATCGCCAACC 1321
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1318 GAGAGTGTTTTATCCGCTTCAAGAAAGCTCACGACGCTCTCACCTGTCTCATCTCCAACC 1377
Query 1322 CAACATTTGCTGATATCGGCAATCTCCAATCCAAAGAATGTTCAGAGACTTGTGAAAACC 1381
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1378 CAACATTTGCTGATATCCGCAATCTCCAATCCAAAAAATGTTCAGAGATTTGTGAAAACC 1437
Query 1382 AACAGGCAGAGATTGCAGAGTATATACACGGAACTCGTGAAGGGGTTGAAAGAGTTAGGG 1441
||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 1438 AACAGGCAGAGATTGCAGAGTATCTACACGGAGCTCGTGGAGGGGTTGAAAGAGTTAGGG 1497
Query 1442 ATCGAGTGCACAAAAAGCAATGGAGGGTTCTACTGTTGGGCCGATATGCGAGGATTGATT 1501
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 ATCGAGTGCACAAGAAGCAATGGAGGGTTCTACTGTTGGGCTGATATGCGAGGATTGATT 1557
Query 1502 TCATCTTACAGCGAAAAAGGCGAGATCGAGCTGTGGAACAAGCTCTTGAACATTGGCAAG 1561
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1558 TCATCTTACAGCGAAAAAGGCGAGATTGAGCTGTGGAACAAGCTCTTGAACATTGGCAAG 1617
Query 1562 ATCAATGTCATACCAGGATCTTGTTGTCACTGTATCGAACCAGGATGGTTCCGTATCTGT 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ATCAATGTCATACCAGGATCTTGTTGTCACTGTATCGAACCAGGATGGTTCCGTATCTGT 1677
Query 1622 TTCAGTAATTTGTCTGAGAGAGATGTGCCTGTAGTTATGAACCGCATTAGAAAAGTTTGT 1681
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1678 TTCAGTAATTTGTCTGAGAGAGATGTGCCAGTAGTTATGAACCGCATTAGAAAAGTTTGT 1737
Query 1682 CAAACATGTAAATCTCAAAATTGATTCTGCAATTTGATTATTTG 1725
||||||||||||||||||||||||| |||||||||||||||
Sbjct 1738 GAAACATGTAAATCTCAAAATTGATTA--CAATTTGATTATTTG 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5