BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924762
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62370.1 | Symbols: | RING/U-box superfamily protein | chr1... 931 0.0
> AT1G62370.1 | Symbols: | RING/U-box superfamily protein | chr1:23072575-23073189
FORWARD LENGTH=615
Length=615
Score = 931 bits (504), Expect = 0.0
Identities = 580/616 (94%), Gaps = 8/616 (1%)
Strand=Plus/Plus
Query 21 ATGAGTCAACTCGGAGATTTGCTTAGAGAATCAGAAGATGGAACAAGAAGTGAGAGGACG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTCAACTCGGAGATTTGCTTAGAGAATCAGAAGATGGAACAAGAAGTGAGAGGACG 60
Query 81 ATGATGATGAGTTTGCTTGAAGAAGATCAAATCAACGGTGGAGATCGAACGATGAGTAAA 140
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 61 ATGATGATGAGTTTGCTCGAAGAAGATCAAATCAACGGTGGAGATAGAACGATGAGCAAA 120
Query 141 TGGACTACGTTGAAGCAACGGCTGAGATTTGATTGGGTTGGTTGTTATGGTAAGCCTCTT 200
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGGACTACGTTAAAGCAACGGCTGAGATTTGATTGGGTTGGTTGTTGTGGTAAGCCTCTT 180
Query 201 ACTCTGCGTCTCAGACAATCGGAAACACCAATCGTCGTCGATGATGATGATGA--A-GAA 257
|||||||||||||||||| |||| |||||||||||||||||||||||||| || | |||
Sbjct 181 ACTCTGCGTCTCAGACAAGCGGAGACACCAATCGTCGTCGATGATGATGACGACGAAGAA 240
Query 258 GAAAGTCAAAACCGGGTCATTGACCTTGCGGGTTCGGGTACGGGTACGGAGTTGGATTGT 317
||||||||||||| |||| ||||| || ||| | ||||||||||||||||||||||||||
Sbjct 241 GAAAGTCAAAACCAGGTCGTTGACTTTTCGGATCCGGGTACGGGTACGGAGTTGGATTGT 300
Query 318 TTGACACGTGGCGTGA-CGAGGAACCTTGCAGAGGCTTTAGCGGAGGAGAGATTAGCGCA 376
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGACACGTGGC-TCAACGAGGAACCTTGCAGAGGCTTTAGCGGAGGAGAGATTAGCGCA 359
Query 377 CGTGACTGCGGAGGAGGCTTCAGTTGCTAAAGTACCGTTGATGAGGTTGCTTGCGGAATC 436
|||||| | ||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CGTGACGGAGGAGGAGACAGCAGTTACTAAAGTACCGTTGATGAGGTTGCTTGCGGAATC 419
Query 437 GGACGGTTGTGATTCGACGACGT-GT--TTGGGTAATGATCCGGTGTGTTGCGTGTGTAT 493
|||||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||
Sbjct 420 GGACGGTTGTGATTCGACGACGACGTGGTTGGGTAATGATCCGCTGTGTTGTGTGTGTAT 479
Query 494 GGGAAGAGAGAAAGGTGCGGCTTTTATTCCCTGTGGACATATGTATTGTAGAGTGTGTTC 553
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 480 GGGAAGAGAGAAAGGTGCGGCTTTTATTCCCTGTGGACATACGTATTGTAGAGTTTGTTC 539
Query 554 GAGAGAGATTTGGATGAATCGTGGGACGTGTCCTCTTTGTAACCGTTCGATCTTTGACGT 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGAGAGATTTGGATGAATCGTGGGACGTGTCCTCTTTGTAACCGTTCGATCTTTGACGT 599
Query 614 TCTTGATCTCTACTGA 629
||||||||| ||||||
Sbjct 600 TCTTGATCTTTACTGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5