BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924903
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61260.1 | Symbols: | Protein of unknown function (DUF761) ... 1461 0.0
AT1G11210.1 | Symbols: | Protein of unknown function (DUF761) ... 87.9 2e-16
> AT1G61260.1 | Symbols: | Protein of unknown function (DUF761)
| chr1:22593465-22595069 REVERSE LENGTH=1409
Length=1409
Score = 1461 bits (791), Expect = 0.0
Identities = 1017/1119 (91%), Gaps = 43/1119 (4%)
Strand=Plus/Plus
Query 1 GAAAGCTTAAATCGGAAAAAATGGTTTCGTGGATGATGACAGTCAAGGCGGTGCTAATCT 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 64 GAAAGCTTAAATCGGAAAAAATGGTTTCGTGGATGATGACAACCAAGGCGGTGCTAATCT 123
Query 61 CAAGCGGCGTCGCCACCATGGCTCTGTTACTTAAACTCTCTGTTCCGGTAGCTGTTGATT 120
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 124 CAAGCGGCGTCGCCACCGTGGCTCTGTTACTGAAACTCTCTGTTCCGGTAGCTGTTGATT 183
Query 121 TCTCCGTGTCACGAGCTCCGATCTTTTGGAGTTCCTTGTTGTCATGGCTAAAACCGCCGT 180
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct 184 TCTCCGTGTCACGAGCTCCGATCTTGTGGAGCTCCTTGTTGTCATGGCTGAAACCACCGT 243
Query 181 ATCTTTACGTTGTTACCAACGGAATTATCATCACTATCGTCGCTTCTTCTAAGTATTACC 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 244 ATCTTTACGTTGTTACCAACGGAATTATCATCACTATCGTTGCTTCTTCTAAGTATTACC 303
Query 241 GACGCCACCATGACCGTGATGAAGAAGATGAGATCGTTGTATACGGTGGTGGAGGTTATA 300
|| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 304 GAAGTCACCATGACCGTGATGAAGAAGATGAGATCGTCGTGTACGGTGGTGGAGGTTATA 363
Query 301 AGATCCATACGGAGGATTCGATTGTGAATCAACATCAAGCTTCTCCGCGGATTCTGGAGG 360
||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 364 AGATCCAGACGGAGGAGCCGATTGTGAATCAACATCAAGCTTCTCCGAGGATTCTGGAGG 423
Query 361 TTAAGGATTTAGATACTGGTGCGCATTTTGGTTTCGTTGTGGCGAATCCGGAGGCGGAGG 420
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 424 TTAAGGATTTGGATACTGGTGCGCATTTTGGTTTCGTTGTGGCGAATCTGGAGGCTGAGG 483
Query 421 AATTGGAATCAGAGGCGGTTACGGCGGTTGTGTATGATGATGAGGAGGAGAAGATA-ACA 479
|| |||||||||||||||||||||||||||||| ||| |||||||||||| ||| | | |
Sbjct 484 AACTGGAATCAGAGGCGGTTACGGCGGTTGTGTTTGACGATGAGGAGGAGGAGA-AGA-A 541
Query 480 GAT-ACGG-TAGCGACGGCG--GA-GGAAGATGAAATTGAAGAGGAGCTTAAGAGTGTGA 534
||| | | ||||| ||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 542 GATTATAGATAGCG-CGGCGACGGCGGAGGATGAAATTGAAGAGGAGCTTAAGAGTGTGA 600
Query 535 TTATGGTGGAGAATTCAGATCTGGTTGAATCCGATGTCATATCTTCGCCAATTTCAGATC 594
||||||| ||||||||||||||||||||||||||||||||| | |||| | |||
Sbjct 601 TTATGGTTGAGAATTCAGATCTGGTTGAATCCGATGTCATA-C--CGCCGC---C-GAT- 652
Query 595 GGAATAATCTGCCGCCGATGATGATTGAGTCAGAGAATCTTCCTCCGATTGAGAAGCCTC 654
| | | ||| | | || | | ||| | |||||||||||||||||||||||
Sbjct 653 G-A-TGATC-G------A--ATC---G-G--AGA-A-TCTTCCTCCGATTGAGAAGCCTC 693
Query 655 TTGTTACTTCAAGGTTCGGTCACCGGAAACTGATGAAAGCAAGTCAAGAAGGTGGAAGAG 714
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 694 TCGTTACTTCAAGGTTCGGTCACCGGAAATTGATGAAAGCAAGTCAAGAAGGTGGAAGAG 753
Query 715 CTTTGAGAGTGACGAAGCCGAAGAAGAACGAGACATTAGAGAATACGTGGAAGATGATTA 774
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 754 CTTTGAGAGTGACGAAGCCGAAGAAGAACGAGACGTTGGAGAATACGTGGAAGATGATAA 813
Query 775 TGGAAGGGAAGTCAACGCCGTTGACTAGACAGTTATACCGGAGATCTGATACGTTTGGTC 834
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 814 CGGAAGGGAAATCAACGCCGTTGACTAGACAGTTATACCGGAGATCTGACACGTTTGGAC 873
Query 835 GTGGTGATTCCGGCGGAGTTGACGGCGAGGTGAAACCGGTTTACAAGAAATCGGATACGT 894
|||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 874 GTGGAGATTCCGGGGGAGTTGACGGTGAGGTGAAACCGGTTTATAAGAAGTCGGATACGT 933
Query 895 TTAGGGACAGGACTAATTATTATCAGTCGCCGGAGATGGTGAAGGTGAGGAAAGAGCCGT 954
||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||
Sbjct 934 TTAGGGACAGGACTAATTATTATCAGTTGGCGGAGACGGCGAAGGTGAGGAAAGAGCCGT 993
Query 955 CGCTGAGCCAGGACGAGCTGAATCGGCGAGTTGAAGCGTTTATAAAGAAGTTTAATGAGG 1014
||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 994 CGCTGAGTCAGGAAGAGTTGAATCGGCGAGTTGAGGCGTTTATAAAGAAGTTTAATGAGG 1053
Query 1015 AGATGAAGTTGCAGAGAATGGAGTCGCTGAGACAGTACAAAGATATAACTAGCCGTGGGG 1074
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1054 AGATGAAGTTGCAGAGAATGGAGTCTCTCAGACAGTACAAAGAGATAACTAGCCGTGGGG 1113
Query 1075 TTTAGttt--t-ttttt-tCT-C-G-TTAAAATTTTTTC 1106
|||||||| | ||||| | | | | |||||||||||||
Sbjct 1114 TTTAGTTTACTGTTTTTATTTTCTGGTTAAAATTTTTTC 1152
> AT1G11210.1 | Symbols: | Protein of unknown function (DUF761)
| chr1:3755677-3756998 REVERSE LENGTH=1213
Length=1213
Score = 87.9 bits (47), Expect = 2e-16
Identities = 75/87 (86%), Gaps = 7/87 (8%)
Strand=Plus/Plus
Query 711 AGAGCTTTGAGAG-TGACGAAGCCGAAGAAG-AACGAGACATTAGAGAATACGTGGAAGA 768
||||| ||||||| || |||| ||||| | | |||||||| |||||||||||||||||||
Sbjct 643 AGAGCGTTGAGAGTTG-CGAAACCGAA-ACGTAACGAGACGTTAGAGAATACGTGGAAGA 700
Query 769 TGATTATGGAAGGGAA---GTCAACGC 792
||||||||||||| || ||||||||
Sbjct 701 TGATTATGGAAGGCAACAAGTCAACGC 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54216588600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5