BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924950

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like su...   822    0.0  


> AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like 
superfamily protein | chr1:22444390-22445222 FORWARD LENGTH=833
Length=833

 Score =  822 bits (445),  Expect = 0.0
 Identities = 484/503 (96%), Gaps = 1/503 (0%)
 Strand=Plus/Plus

Query  1    CTCAAAAATCTCAACTTTATCTCCCAAAACACAAAAC-CaaaaaaaTGGCTTCCACTGCT  59
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct  131  CTCAAAAATCTCAACTTTATCTCCCAAAACACAAAACAAAAAAAAATGGCTTCCACTGCT  190

Query  60   CTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCCATCAGTCTC  119
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  191  CTCTCAAGCGCCATCGTCGGAACTTCATTCATCCGTCGTTCCCCAGCTCCAATCAGTCTC  250

Query  120  CGTTCCCTTCCATCAGCCAACACACAATCCCTATTCGGTCTCAAATCAGGCACCGCTCGT  179
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  251  CGTTCCCTTCCATCAGCCAACACACAATCCCTCTTCGGTCTCAAATCAGGCACCGCTCGT  310

Query  180  GGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  GGTGGACGTGTCACAGCCATGGCTACATACAAGGTCAAGTTCATCACACCAGAAGGTGAG  370

Query  240  CAAGAGATTGAGTGTGAAGACGACGTTTACGTTCTTGACGCGGCCGAGGAAGCTGGAATC  299
            | |||| |||||||||| |||||||| ||||||||||| || || |||||||||||||||
Sbjct  371  CTAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGATGCTGCTGAGGAAGCTGGAATC  430

Query  300  GATTTGCCATACTCTTGTCGTGCTGGTTCTTGTTCAAGCTGTGCTGGTAAAGTTGTGTCT  359
            |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  431  GATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCT  490

Query  360  GGATCTGTTGATCAGTCTGACCAAAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTT  419
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  491  GGATCTGTTGATCAGTCTGACCAGAGTTTCCTTGATGATGAACAGATTGGTGAAGGGTTT  550

Query  420  GTTCTCACTTGTGCTGCTTATCCTACTTCTGATGTTACCATTGAAACTCACAAAGAAGAA  479
            |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct  551  GTTCTCACTTGTGCTGCTTACCCTACCTCTGATGTTACCATTGAAACCCACAAAGAAGAA  610

Query  480  GACATTGTTTAAGCTTCACCTAC  502
            |||||||||||||| ||||||||
Sbjct  611  GACATTGTTTAAGCCTCACCTAC  633



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5