BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924996
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein... 2540 0.0
AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein... 926 0.0
> AT1G60590.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:22314170-22316970 REVERSE LENGTH=1982
Length=1982
Score = 2540 bits (1375), Expect = 0.0
Identities = 1579/1672 (94%), Gaps = 36/1672 (2%)
Strand=Plus/Plus
Query 10 AACAACAAAAAGACATGATAACGAGAGAGAGTCTAAGGCTGAGAAGCATCACAATGATGA 69
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 90 AACAACAAAAAGACATGATAACGAGAGAGAGTTTAACGCTGAGAAGCATCACAATGATGA 149
Query 70 TTTTAGTGACAATCCTGGTCTGGTCTACAACTCTAGAGACTTGCATTGCCAGAAGAGGAA 129
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 150 CTTTAGTGACAATCCTGGTCTGGTCTGCAACTCTAGAGACCTGCATTGCCAGAAGAGGAA 209
Query 130 GACATTGGAGACACCACCATAGCAGTTCCTCCTCTTTGTCTGATTCCTTGTCCAGCAAGA 189
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 210 GACATTGGAGACACCACCATAGGAGCTCCTCCTCTTTGTCTGATTCCTTGTCCAGCAAGA 269
Query 190 AACCAAAAAGCCATGTGAACAACCACAACAATAGTCAT-TCCCATAAGTCAAAACCAAAA 248
||||||||||||||| |||||||||| || | ||| |||||||||| |||||
Sbjct 270 AACCAAAAAGCCATGAGAACAACCAC--CACCA--CATGTCCCATAAGT------CAAAA 319
Query 249 CCAAAACCGAAGATGAAAACTCAGCCGCCAAAAT-CAAGTGACGGTTCACCTGTCGTGTC 307
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 320 CCAAAACCGAAGATGAAAACTCAGCCGCCAAAATCCAA-CGACGGTTCACCTGTTGTGTC 378
Query 308 ACAGCCACCACAAGTTCAACAACCACCACCA-C-CA--T--------------CACCTCT 349
||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 379 ACAGCCACCACAAGTTCAACAACCACCACCACCACATGTCCAACCACCACCAACACCTCT 438
Query 350 TCCGCTGAAGCCAGTTGATGGGGACTCACAAGAATTCAATGTGCTTGATTTTGGAGCTAA 409
||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 439 TCCGCTGCAGCCAGTTGA---GGACTCTCAACAATTCAATGTGCTTGATTTTGGAGCTAA 495
Query 410 GGGTGATGGCATGAGTGATGACACTGAGGCGTTTAAAGCGGCGTGGGCATCTGCCTGCAA 469
||||||||| ||||||||||||||| |||||||| |||| || |||||||||||||||||
Sbjct 496 GGGTGATGGAATGAGTGATGACACTCAGGCGTTTGAAGCTGCATGGGCATCTGCCTGCAA 555
Query 470 AGTCGAAGCGTCAACGATGATCATACCGCCGGACTACATCTTCCTCGTCGGCCCGATTTC 529
|||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 556 AGTCGAGGCCTCAACGATGATCATACCGCCTGACTACATCTTCCTCGTTGGCCCGATTTC 615
Query 530 CTTTTCGGGTCCTTATTGTCAAGCAAACATTGTATTCCAACTGGATGGGATGATTGTAGC 589
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 616 ATTCTCGGGTCCTTATTGTCAAGCAAACATTGTATTCCAACTGGAGGGGATGATTGTAGC 675
Query 590 TCCTACGGATACTGAATCGTGGGGAGGAGGGTTAATGTGGTGGATTGAGTTCACGAAGCT 649
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TCCTACCGATACTGAATCGTGGGGAGGAGGGTTAATGTGGTGGATTGAGTTCACGAAGCT 735
Query 650 TAAAGGAATTACAATTCAAGGTAAAGGTGTTATTGATGGAAGAGGTACTGTTTGGTGGCA 709
|| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 736 TAGCGGAATTACAATACAAGGTAATGGTGTTATTGATGGAAGAGGCACTGTTTGGTGGCA 795
Query 710 ACAAGATTACCTTTCCGATTATCCTATCGACGATGACTTCAAGCTCATTGTCCCGTTGAA 769
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 796 ACAAGATTACCTTTCCGATTATCCTATCGACGATGACTTTAAGCTCATTGTCCCGTTGAA 855
Query 770 CAATTCGGTCCAAGAACGTCCTCCAATGCCGATAAGAAGTGAGCTTAATTGGAGAATGCC 829
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 856 CAACTCGGTCCAAGAACGTCCTCCAATGCCGATAAGAAGTGAACTTAATTGGAGAATGCC 915
Query 830 AAGCATTAAACCAACGGCGCTGCGGTTTTATGGCAGTATCGATGTGACTGTGACGGGTAT 889
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 916 AAGTATTAAACCAACGGCGCTGAGGTTTTATGGCAGTATCGATGTGACTGTGACGGGTAT 975
Query 890 AACCATTCAGAACAGTCCTCAATGTCACCTCAAGTTTGATAACTGCGTCCAGGTTTTAGT 949
||| || |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 976 AACTATACAGAACAGTCCTCAATGTCACCTCAAATTTGATAACTGTGTCAAGGTTTTAGT 1035
Query 950 TCATGACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCAT-TTGC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1036 TCATGACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCATCTT-C 1094
Query 1009 AGAACACCAAAGATGTCATGATTCACACCACCACATTAGCTTGCGGAGACGATTGTATTT 1068
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1095 AGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGGAGACGATTGTATTT 1154
Query 1069 CGATTCAAACGGGTTGCTCCAATGTGTATGTTCACAATGTGAATTGTGGACCAGGACATG 1128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1155 CGATTCAAACCGGTTGCTCCAATGTGTATGTTCACAATGTGAATTGTGGACCAGGGCATG 1214
Query 1129 GAATCAGCATTGGTAGCCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAG 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GAATCAGCATTGGTAGCCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAG 1274
Query 1189 TCCGAGATGTAGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGGGAG 1248
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGGGAG 1334
Query 1249 GTATAGGATCAGTGAAAGGAATACTTTTCTCAAACATTCAACTCAAAGAGGTTCAGCTAC 1308
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1335 GTATAGGGTCAGTGAAAGGAATACTTTTCTCAAATATTCAACTCACAGAGGTTCAGCTAC 1394
Query 1309 CGATAGTGATCGATCAATTCTACTGTGATCACAGCAAATGCATGAACCATACTTCAGCAG 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CGATAGTGATCGATCAATTCTACTGTGATCACAGCAAATGCATGAACCATACTTCAGCAG 1454
Query 1369 TGTCCGTAGAAGGAGTCACATATGAGAAGATACGCGGAACTTACACCGTGAAGCCTGTGC 1428
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1455 TGTCCGTAGAAGGAGTCACATATGAGAAGATACGAGGCACTTACACCGTGAAGCCTGTGC 1514
Query 1429 ATTTTGCTTGCAGTGACAGTTTCCCTTGCATAGACGTGCAATTATCAGGCATAGAGCTAA 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 ATTTTGCTTGCAGTGACAGTTTCCCTTGCATAGACGTGCAATTATCAGGCATAGAGCTAA 1574
Query 1489 AACCAGTGCAACTACAATACCACATGTACGATCCATTTTGTTGGAAAACATTTGGAGAGC 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 AACCAGTGCAACTACAATACCACATGTACGATCCATTTTGTTGGAAAACATTTGGAGAGC 1634
Query 1549 TCAATTCGGCAACCGTTCCACCGATTGATTGCTTACAGATCGGAAAGCCAGCCCGAAATG 1608
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1635 TCAATTCCGCAACCGTTCCACCGATTGATTGCTTACAGATCGGAAAGCCAGCGCGAAATG 1694
Query 1609 GAGTCCATTCAGATCATGATATATGTTTATAACCTACAGGGGAATGTAAAAT 1660
|||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1695 GAGTCCATTCAGATCATGATATATGTTTATGACCTACAGGGGAATGCAAAAT 1746
> AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:3515365-3517888 REVERSE LENGTH=1793
Length=1793
Score = 926 bits (501), Expect = 0.0
Identities = 1277/1636 (78%), Gaps = 116/1636 (7%)
Strand=Plus/Plus
Query 11 ACAACAAAAAGACATGATAACGAG-AGAGAGTCTAAGGCTGAGAAGCATCACAATGATGA 69
||||| |||| | ||||||| ||| ||| |||||||| |||||||||||||| |||||||
Sbjct 72 ACAAC-AAAA-A-ATGATAATGAGAAGA-AGTCTAAGTCTGAGAAGCATCACGATGATGA 127
Query 70 TTTTAGTGACAATCCTGGTCTGGTCTA-CAACTCTAGAGACTTGCATTGCCAGAAGAGGA 128
| ||| || | | |||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 128 TATTAATGGCTGTTTTGGTCTGGTC-AGTGACTCTAGAGACCTGCATTGCCAGAAGAGGA 186
Query 129 AGACATTGGAGACA---CCACC-ATAGCAGTTCCTCCTCTTTGTCTGATTCCTTGTCCAG 184
|||||||||||||| ||||| | ||| ||| | ||| ||||||||||||||| |
Sbjct 187 AGACATTGGAGACATAGCCACCGA-AGCTCTTC-TGA-CTT-GTCTGATTCCTTGTCAAA 242
Query 185 CAAGAAACCAAAAAGCCATGTGAACA---ACCACAACAATAGTCATT-C--C--C-AT-A 234
||||||||| || ||||||| ||||| ||||| ||| | ||| | | | || |
Sbjct 243 CAAGAAACCGAAGAGCCATGGGAACAGTCACCACCACAGTTCTCACAACAACAACCATCA 302
Query 235 --A---GTCAAAACCAAAACCAAAACCGAAGATGAAAACTCAGCCGCCAAAA--TCAAGT 287
| ||| ||||| ||||| ||||| ||| ||||||| |||||||||| ||| |
Sbjct 303 CCACAAGTCTAAACCTAAACCGAAACCAAAGCTGAAAAC---GCCGCCAAAAGCTCACG- 358
Query 288 GACGGT---TCACCTGTCGTGTCACAGCCACCACAAGTTCAACAACCACCACCACCATCA 344
|| | || || || || ||| ||||||| |||| | |||||||| || ||
Sbjct 359 -ACAATAACTCTCCGGTGGTTTCAGGGCCACCAAAAGT-C--CAACCACCGCC----TC- 409
Query 345 CCTCTTCCGC-TGAAGCCAGTTGATGGGGACTCACAAGAATTCAATGTGCTTGATTTTGG 403
| | |||| | || | | ||| | || |||| ||||||||| | ||||||||
Sbjct 410 --T-T-CCGCCTCAA---A----A-GGG-A-TCTCAAGTTTTCAATGTGATGGATTTTGG 455
Query 404 AGCTAAGGGTGATGGCATGA-GTGATGACACTGAGGCGTTTAAAGCGGCGTGGGCATCTG 462
||| ||||||||||||| | ||||||||||| |||||||| ||||||| |||| | | |
Sbjct 456 AGCAAAGGGTGATGGCAA-ATGTGATGACACTAAGGCGTTTGAAGCGGCTTGGGTAGCAG 514
Query 463 CCTGCAAAGTCGAAGCGTCAACGATGATCATACCGCCGGACTACATCTT-CCTCGTCGGC 521
| |||||| ||||||| ||| |||| | ||||||| || |||| ||| ||| || ||
Sbjct 515 CTTGCAAAATCGAAGCATCAGTGATGCTTGTACCGCCTGAATACA-CTTACCTTGTTGGA 573
Query 522 CCGATTTCCTTTTCGGGTCCTTATTGTCAAGCAAACATTGTATTCCAACTGGATGGGATG 581
||||| || || || ||||||||||||||||| |||||||| ||||| || ||||| | |
Sbjct 574 CCGATCTCATTCTCTGGTCCTTATTGTCAAGCTAACATTGTGTTCCAGCTTGATGGTACG 633
Query 582 ATTGTAGCTCCTACGGATACTGA-ATCGTGGGGAGGAGGGTTAATGTGGTGGATTGAGTT 640
||| ||||||| |||||| | | | | |||||| ||||||||||||||||||||| ||
Sbjct 634 ATTATAGCTCCAACGGATTCAAAGA-CATGGGGAAAAGGGTTAATGTGGTGGATTGATTT 692
Query 641 CACGAAGCTTAAAGGAATTACAATT-CAAGGTAAAGGTGTTATTGATGGAAGAGG-TACT 698
|| ||||| |||||||||| || | ||||| ||||||||||||||||||||||| | ||
Sbjct 693 TACAAAGCTGAAAGGAATTA-AAGTACAAGGGAAAGGTGTTATTGATGGAAGAGGCT-CT 750
Query 699 GTTTGGTGGCAACAAGATTA-CCTTTCCGATT-ATCCTATCGACGATGACTTCAAGCTCA 756
| ||||||||||||||||| |||||| ||| || | | ||| || ||| ||||
Sbjct 751 GGTTGGTGGCAACAAGATTCTCCTTTC--ATTGAT---A--GT-GAT-AC--CAAACTCA 799
Query 757 TTGTCCCGTTGAACAATTCGG-T--CCAAGAACGTCCTCCAATGCCGATAAGAAGTGAGC 813
| ||||| ||||||||||| | | |||| ||| ||||| |||||||| ||||||||||
Sbjct 800 TCGTCCCTTTGAACAATTCTGCTAACCAA-AAC--CCTCCTATGCCGATCAGAAGTGAGC 856
Query 814 TTAATTG-GAGAATGCCAAGCATTAAACCAACGGCGCTGCGGTTTTATGGCAGTATCGAT 872
|| || | ||||||||||||||||||||||||||| || | || | ||| ||| | | |
Sbjct 857 TTGAT-GAGAGAATGCCAAGCATTAAACCAACGGCATTGAGATTCTCTGGGAGTTTTGGT 915
Query 873 GTG-ACTGTGACGGGTATAACCATTCAGAACAGTCCTCAATGTCACCTCAAGTTTGATAA 931
||| | |||||||||||||| || || ||||||||||| ||||||||||| || || |
Sbjct 916 GTGGAA-GTGACGGGTATAACGATACAAAACAGTCCTCAGTGTCACCTCAAATTCGACGA 974
Query 932 CTGCGTCCAGGTTTTAGTTCATGACGT-GAATGTGTCTTCTCCCGGAGACAGTCCAAACA 990
|||||| |||| | || |||||| | | || ||||| || || |||||||||||||
Sbjct 975 CTGCGTAGGGGTTGTGGTGCATGACATAGCC-GTTTCTTCACCTGGTGACAGTCCAAACA 1033
Query 991 CAGATGGGATTCATTTGCAGAACACCAAAGATGTCATGATTCACACCACCACAT-TAGCT 1049
| ||||| ||||| | |||||||||||||||||| | ||||||| ||| || | | |||
Sbjct 1034 CTGATGGAATTCACCTCCAGAACACCAAAGATGTCCTCATTCACAGCACTAC-TCTCGCT 1092
Query 1050 TGCGGAGACGATTGTATTTCGATTCAAACGGGTTGCTCCAATGTGTATGTTCACAATGTG 1109
|||||||| || ||||| ||||| |||||||||||||| || |||| ||| |||||||||
Sbjct 1093 TGCGGAGATGACTGTATCTCGATCCAAACGGGTTGCTCGAACGTGTTTGTGCACAATGTG 1152
Query 1110 AATTGTGGACCAGGACATGGAATCAGCATTGGTAGCCTTGGTAAAGACAGTACCAAAGCC 1169
|| |||||||| || || || |||||||||||||| || || ||||| |||| ||||||
Sbjct 1153 AACTGTGGACCGGGTCACGGGATCAGCATTGGTAGTCTCGGCAAAGAGGGTACAAAAGCC 1212
Query 1170 TGTGTCTCCAACATAACAGTCCGAGATGTAGTTATGCACAACACAATGACCGGTGTCCGG 1229
|| ||||| ||||||||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct 1213 TGCGTCTCGAACATAACAGTACGAGACGTAGCTATGCACAACACAATGACAGGTGTCCGA 1272
Query 1230 ATCAAGACTTGGCAGGGAGGTA-TAGGATCAGTGAAAGGAATACTTTTCTCAAACATTCA 1288
|||||||| ||||| ||||| | |||||||||||||||| ||| | ||||||||||||||
Sbjct 1273 ATCAAGACATGGCAAGGAGG-AGTAGGATCAGTGAAAGGGATAATCTTCTCAAACATTCA 1331
Query 1289 ACTCAAAGAGGTTCAGCTACCGATAGTGATCGATCAATTCTACTGTGATCACAGCAAATG 1348
||||| | || || | || ||| ||| | |||||||||||||| || ||||||||
Sbjct 1332 GCTCAACCAAGTACAAATTCCAATAACGATAAACCAATTCTACTGTGACCATAGCAAATG 1391
Query 1349 CATGAACCATACTTCAGCAGT-GTCCGTAGAAGGAGTCACATATGAGAAGATACGCGGAA 1407
|| |||||| || |||||||| | | || |||||||| || || |||| |||| ||||
Sbjct 1392 CAAGAACCAAACATCAGCAGTAG-CAGTGGAAGGAGTGACTTACGAGAGGATAAAAGGAA 1450
Query 1408 CTTACACCGTGAAGCCTGTGCATTTTGCTTGCAGTGACAGTTTCCCTTGCATAGACGTGC 1467
|||| |||||||| || |||||||| ||||| || || | ||||| || |||| ||||
Sbjct 1451 CTTATACCGTGAAACCGGTGCATTTCGCTTGTAGCGATAACTTCCCGTGTGTAGATGTGC 1510
Query 1468 AATTATCAGGC-ATAGAGCTAAAACCAGTGCAACTACAA-TACC-ACATGTACGATCCAT 1524
| ||||| | | |||||||| ||||| || ||| | || || | | ||||| ||| | |
Sbjct 1511 AGTTATC-GTCGATAGAGCTTAAACCGGTTCAAGAA-AAGTATCGA-ATGTATGATGC-T 1566
Query 1525 T-TTGTTGGAAAACATTTGGAGAGCTCAATTCGGCAAC-CGTTCCACCGATTGATTGCTT 1582
| ||| ||| | |||||||| |||||||| | | || | |||| || |||||||| ||
Sbjct 1567 TATTGCTGGCAGACATTTGGTGAGCTCAACACTCCTACTC-TTCCTCCCATTGATTGTTT 1625
Query 1583 -ACAGATCGGAAAGCC 1597
| |||| || |||||
Sbjct 1626 GA-AGATTGGGAAGCC 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5