BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925037
Length=2884
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60200.1 | Symbols: | splicing factor PWI domain-containing... 4204 0.0
> AT1G60200.1 | Symbols: | splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
| chr1:22200733-22205288 REVERSE LENGTH=2896
Length=2896
Score = 4204 bits (2276), Expect = 0.0
Identities = 2704/2898 (93%), Gaps = 79/2898 (3%)
Strand=Plus/Plus
Query 18 ACTCCCATGGCCGACGAATCTTCTTCTCCGGCCACGGGGGATCTCAATTCTCAGAAACCA 77
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 42 ACTCCCATGGCCGACGAATCTTCTTCTCCGGCCACGGGGGATCCCAATTCACAGAAACCA 101
Query 78 GAAGCCACTACTCCGATTCCAATTCCCAATCCAAATCCCAATCCTTCACTAACACCACCA 137
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GAATCCACTACTCCGATTTCAATTCCCAATCCAAATCCCAATCCTTCACTAACACCACCG 161
Query 138 CCGCCTCAACACCATACGCAACCACAAGTAGCTGCTCTGATTCCGCCTGGTCCGCCTTAT 197
||||||||||| ||| ||||||||| ||| ||| ||||| |||| |||||||||||||||
Sbjct 162 CCGCCTCAACAACATTCGCAACCACCAGTCGCTCCTCTGGTTCCACCTGGTCCGCCTTAT 221
Query 198 ACTCCTCCGTCACAGATTCCTGGCTCACTTCTCCCCACCAATCTTCCGCCGCCACCACCA 257
|||||||| | ||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 222 GCTCCTCCGGCTCAGATTCCTAGCTCGCTTCTCCCCACCAATCTCCCGCCGCCACCACCA 281
Query 258 TTCCGTCCCGGTATGCAGTTCACTCCCGCTGGGAATTTTCAAAACCCTAGCTCTGGAGTT 317
|||||||||||||||||||||||||||| || |||||||||||| | | || ||
Sbjct 282 TTCCGTCCCGGTATGCAGTTCACTCCCGTTGCGAATTTTCAAAA--C---C-CT--AG-- 331
Query 318 CCTCCTCCCGGCGTGAATTCTATGGCGGTTCCAGGATCTATGCCTCAGTATCAACTGCAG 377
|| || | || ||| | | ||||||||||||||||||||||| | |
Sbjct 332 -CT-CT------G-GAGTTC-CT--C--CTCCAGGATCTATGCCTCAGTATC-A----A- 371
Query 378 CCTCCGAACCAGCCTGGTATGAGGCCTTACCAGCCTATGGCTAATGGTTTTCCCGGAATT 437
||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 372 ---CCG---CAGCCTGGTATGAGACCTTTCCAGCCTATGGCTAATGGTTATCCCGGAATT 425
Query 438 CATGGTGTTGCTCCTCC---T-CC--G---------GGGCTTCTCCGGTATCCTTCTCCA 482
||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 426 CATGGTGTTGCTCCTCCTGGTGCCATGCCTCCTCATGGGCTTCTCCGGTATCCTTCTCCA 485
Query 483 TATCCAACAATGGTTCGTCCTGGGTTCATTATGCGCCCGCCTGGTACAATCGGTGCTGTT 542
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 486 TATCCAACAATGGTTCGTCCTGGATTCATTATGCGGCCGCCTGGTACAATCGGTGCTGTT 545
Query 543 CAACTAGCACCACGACCTGC-TGTCCCGGGAATGCCTGGTCTCCGTCCTGTAATGCCTCC 601
||||||||||||||||| | | | || ||||||||||||||||||||||||||||||||
Sbjct 546 CAACTAGCACCACGACC-CCTTATTCCAGGAATGCCTGGTCTCCGTCCTGTAATGCCTCC 604
Query 602 TATGGTTAGACCAGCTTCTCTTCCTTTTGTAACACCTGCAGAAAAGCCCCAGACCACAAT 661
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TATGGTTAGACCGGCTTCTCTTCCTTTTGTAACACCTGCAGAAAAGCCCCAGACCACAAT 664
Query 662 TTACATTGGCAAGATAGCAACCGTGGAAAATGACTTTATGATGTCTATTCTCGAGTTTTG 721
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 665 TTACATTGGCAAGATAGCTACCGTGGAAAATGACTTTATGATGTCTATTCTTGAGTTTTG 724
Query 722 TGGCCATGTCAAAAGCTGTTTACGTGCGGAAGATCCTACCACCAAGAAACCTAAAGGTTT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TGGCCATGTCAAAAGCTGTTTACGTGCGGAAGATCCTACCACCAAGAAACCTAAAGGTTT 784
Query 782 TGGATTCTATGAATTTGAATCAGCTGAAGGGATTCTCCGTGCAATACGCCTACTGACCAA 841
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 785 TGGATTCTATGAATTTGAATCAGCTGAAGGGATTCTCCGCGCAATACGCCTGCTGACCCA 844
Query 842 ACGTACTATAGATGGACAAGAACTTTTGGTGAATGTTAATCAAGCAACAAAGGAGTATTT 901
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 845 ACGTACTATAGATGGACAAGAGCTTTTGGTGAATGTTAATCAAGCAACAAAGGAGTATTT 904
Query 902 GCTAAAATATGTTGAGAAGAAAATAGAGACTGCAAAGAAAGCCAAGGAAAGTCAAGCTGT 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 905 GCTAAAATATGTTGAGAAGAAAATAGAGACTGCAAAGAAAGCCAAGGAAAGTCAAG--G- 961
Query 962 AGGAACCGAAGAGAACCAAGCTGAAGGTCCTGAAAGTGAGCGACGAAAA-CTTGAGAGTG 1020
| | || ||||||||||||||||||||||||| ||||||| | || || ||||||||||
Sbjct 962 A--A-CCAAAGAGAACCAAGCTGAAGGTCCTGAGAGTGAGCAA-GACAAGCTTGAGAGTG 1017
Query 1021 CTGAAAATGAGACAGGGAAAGATGGAGAACCCAAGAGTAAAGAAAACATTGATATTGCGA 1080
|||| |||||||||||||| ||||||||| | |||| |||||||||||| ||||||||||
Sbjct 1018 CTGATAATGAGACAGGGAAGGATGGAGAATCGAAGATTAAAGAAAACATCGATATTGCGA 1077
Query 1081 ATTCTGCGGTCATAAATGACGAAGAAAGGGAAGCAGACAGAGAGGCTATGGAAAAGATTG 1140
||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ATTCTGCTGTCCTAACTGATGAAGAAAGGGAAGCAGACAGAGAGGCTATGGAAAAGATTG 1137
Query 1141 AAAGTGCTATTGAAGAAAGGTTAAAGTCCAACCCTCTGCCTCCACCACCCCCACCACCAC 1200
||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 1138 AAACTGCTATTGAAGAAAGGTTAAAGTCCAACCCTTTGCCTCCTCCACC---ACCACCAC 1194
Query 1201 CTGCTGATCGTTCAGGCATGGAACTTGCTTTCACATCTAAGGATGGTGACTCCAACACTG 1260
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1195 CTGCTGATGGTTCAGGCATGGAATTTGCTTTCAAATCTAAGGATGGTGACTCCAACACTG 1254
Query 1261 ACATAGCTAGGAGTGATGCCGCAGCAAATGATGTTGAGACTTCTAGAGAACAGAATAGGC 1320
|| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1255 ACGTAGCTAGGAGTGATGCCGCAGCAAATGATGTTGAGACTTCTGGAGAACACAATAGGC 1314
Query 1321 CTGACACAAGCTCTCCTGATTGGAGTAAGAGAAATGACCGAAGAAGCAGAGAAAGAGGTG 1380
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTGACACAAGCTCACCTGATTGGAGTAAGAGAAATGACCGAAGAAGCAGAGAAAGAGGTG 1374
Query 1381 AAAAGGAGCAAGAAATTGATAGACT-CGAGAGGGAGGCTGAACGAGAACGGACAAGGAAA 1439
| |||||||||||||| |||||| | |||||||||||||||| |||||||| ||||||||
Sbjct 1375 AGAAGGAGCAAGAAATGGATAGA-TACGAGAGGGAGGCTGAAAGAGAACGGTCAAGGAAA 1433
Query 1440 GAGAGGGAGCTAAGGAGGAAACTTGAGGATGCAGAGCGTGCTTACCAGACTCGTCTTCGA 1499
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GAGAGAGAGCAAAGGAGGAAACTTGAGGATGCAGAGCGTGCTTACCAGACTCGTCTTCGA 1493
Query 1500 CAATGGGAACGCAGTgaaagagaaaaggagaaggaacgacagtacgagaaggagaaagag 1559
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CAATGGGAACGAAGAGAAAGAGAAAAGGAGAAGGAACGACAGTACGAGAAGGAGAAAGAG 1553
Query 1560 aaagataaagagcgtaagaggaaaaaggaaatccgctatgaagaagaagaggaagaagac 1619
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1554 AAAGAGAAAGAGCGCAAGAGGAAAAAGGAAATCCGCTATGAGGAAGAAGAGGAAGAAGAC 1613
Query 1620 gatgatgattcaagaagaagatgGCATAGGGCTGCATTAGATGAGAGAAGAAGACGACGA 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1614 GATGATGATTCAAGAAGAAGATGGCATAGGGCTGCATTAGATGAGAGAAGAAGACGACAA 1673
Query 1680 CTAAGAGAAAAGGAGGATGACTTAGCTGATAGATTGAAAGAAGAAGAAGAGGTTGCTGAG 1739
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1674 CTAAGAGAAAAGGAGGATGACTTAGCTGATAGATTGAAAGAAGAGGAAGAGGTTGCTGAG 1733
Query 1740 GCGAAGAGAAATGCCGAGGAGCAAAAGTTGCAGCAACAGCAATTAGATGCCTTAAGGATC 1799
|||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1734 GCGAAGAGGAGTGCCGAGGAGCAAAATTTGCAGCAACAGCAATTAGATGCCTTAAGAATC 1793
Query 1800 CTATCTGGACAGGCAGCTATTGGAAGTGAAACGGTTCAGACATCACCTATTGAAAATGAT 1859
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1794 CTATCGGGACAGGCAGCTATTGGAAGCGAAACGGTTCAGACATCACCTATTGAAAATGAT 1853
Query 1860 CATAAGGCAACTCTCCAAACTGTCGGTGAATCTGCCAATGAGCACCATGCAGCAGATTTT 1919
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 CACAAGGCAACTCTCCAAACTGTCGGTGAATCTGCCAATGAGCACCATGCAGCAGATTTT 1913
Query 1920 GAACAAAATGGTTCTGGTAATGAATCCATGGCTATTGATAATAATAGTGGATCAGAGGCA 1979
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1914 GAAGAAAATGGTTCTGGTAATGAATCGATGGCTATCGATAATAATAGTGGATCAGAGGCA 1973
Query 1980 CATGCTCCCTCAAAGAAATTAGGGTTTGGGCTTGTGGGATCCGGAAAGCGAACATCTGTG 2039
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1974 CATGCTCCCTCAAAGAAATTAGGATTTGGGCTTGTGGGATCCGGAAAGCGAACTTCTGTG 2033
Query 2040 CCTTCTGTTTTCTATGAGGAGGATGAAGACGAAGCGCGTAAGGCTAAAAAGATGAAACCT 2099
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2034 CCTTCTGTTTTCTATGAGGAGGATGAAGATGAAGCACGTAAGGCTAAAAAGATGAAACCT 2093
Query 2100 TTGGTTCCTATAGATTACTCAACCGAGGAACAGGAGGCCGTGGCCCATGGTGGCTCAGGG 2159
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2094 TTGGTTCCTATAGATTACTCAACCGAGGAACAAGAGGCTGTGGCCCATGGTGGCTCAGGG 2153
Query 2160 AATACACCACCTCATTTGGCTTTAGCCGCTGAATTTGCTAAACGAATTTCGAGTACTAAT 2219
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2154 AATACACCACCTCATTTGGCTTTAGCCGCTGAATTTGCAAAACGAATTTCGAGTACCAAT 2213
Query 2220 CCCAAGGAAGAGACAATAGAAACCGAAAAACAAAGGAGCAGACGTTCTCATGATAAGTCA 2279
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2214 CCCAAGGAAGAGACGATAGAAACCGAAAAACAAAGGAGCAGACGTTCTCATGATAAGGCA 2273
Query 2280 AGCCACCGGGACAGGGAAAGGGAAAGGGA------CAGGGACAG--A--G--TCAGGGAC 2327
||||||||||||||||||||||||||||| ||||||||| | | ||||||||
Sbjct 2274 AGCCACCGGGACAGGGAAAGGGAAAGGGAAAGGGACAGGGACAGGGATAGAGTCAGGGAC 2333
Query 2328 CGAGGTGATGGGCATAGTGGTCCAACCAAAGACGCTAAAGAGTCTGGAAAAGCAAAGATA 2387
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2334 CGAGGTGACGGGCATAGTGGTCCCACCAAAGACGCCAAAGAGTCTGGAAAAGCAAAGATA 2393
Query 2388 CCTGATACCAAGTTTCTGGATGCGAAACAATTGATAGATACAATCCCAAAGACAAAGGAA 2447
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 ATTGATACTAAGTTTCTGGATGCGAAACAATTGATAGATACAATCCCAAAGACAAAGGAA 2453
Query 2448 GACTTATTTTCGTACGAGATAAACTGGGCTATGTATGACAAGCACCAAGTGCACGAAAGA 2507
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 GATTTATTTTCTTACGAGATAAACTGGGCTATGTATGACAAGCACCAAGTGCACGAAAGA 2513
Query 2508 ATGAGACCATGGATCTCAAAGAAAATTATGGAGTTTCTCGGAGAAGAGGAAGCCACGCTG 2567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2514 ATGAGACCATGGATCTCAAAGAAAATTATGGAGTTTCTCGGAGAAGAGGAAGCCACTCTG 2573
Query 2568 GTAGATTTCATCGTGTCAAACACTCAACAACACGTGAAGGCGTCTCAGATGCTCGAGCTG 2627
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2574 GTAGATTTCATCGTGTCAAACACTCAACAACACGTGCAGGCGTCTCAGATGCTTGAGCTG 2633
Query 2628 TTGCAATCAATTCTAGACGAAGAGGCTGAGATGTTTGTGCTGAAGATGTGGAGAATGCTC 2687
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2634 TTGCAATCAATTCTAGACGAAGAAGCTGAGATGTTTGTGCTGAAGATGTGGAGAATGCTC 2693
Query 2688 ATCTTTGAAATCAAGCGAGTCGAAGCTGGAGTCCCGGTAAAATCCAAAGCCTGAAACTTT 2747
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2694 ATCTTTGAGATCAAGCGGGTTGAAGCTGGAGTCCCGGTAAAATCCAAAGCCTGAAACTTT 2753
Query 2748 TCTTTAAAGATTTTTATCTTCCTTTGTTGCTTAGTATCCCAAtttttttC-AAGTCTTCT 2806
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2754 TCTTTAAAGATCTTTATCTTCCTTTGTTGCTTAGTATCCCAATTTTTTTCCAAGTCTTCT 2813
Query 2807 TGTCTTTGGATTATAAAAGAATCGCCATGTTTAAATGCAAAAGAAGAGATTGAAACAAGA 2866
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2814 TGTCTTTGGATTAAAAAAGAATCGCCATGTTTAAATGCAAAAGAAGATATTGAAACAAGA 2873
Query 2867 AAATACAAATTATACATT 2884
||||||||| ||||||||
Sbjct 2874 AAATACAAAATATACATT 2891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143326956151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5