BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925077
Length=512
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59860.1 | Symbols: | HSP20-like chaperones superfamily pro... 725 0.0
AT1G07400.1 | Symbols: | HSP20-like chaperones superfamily pro... 586 7e-167
> AT1G59860.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:22031413-22032132 FORWARD LENGTH=720
Length=720
Score = 725 bits (392), Expect = 0.0
Identities = 477/516 (92%), Gaps = 13/516 (3%)
Strand=Plus/Plus
Query 1 TTTCGAAATC-ACTCAAAGAAAATGTCGCTAATTCCAAGCTTCTTCGGCAGCAACAGACG 59
|||||||||| || | ||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 42 TTTCGAAATCAAC-C-GAGAAAATGTCGCTGATTCCAAGCTTCTTCGGCAACAACAGGCG 99
Query 60 AATCAACAACAGCATCTTCGATCCATTCTCACTCGACGTTTGGGATCATCCATTCAAGGA 119
||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 100 AATCAACAACAACATATTCGATCCATTCTCACTCGACGTATGGG---ATCCATTCAAGGA 156
Query 120 TCTTCAATTCCCGTCTTCTTCATCGTCATCGGCGATAGCGAACGCACGTGTGGACTGGAA 179
|||||||||||||| || || | || ||||||||||| |||||||||||||| |||||
Sbjct 157 ACTTCAATTCCCGTCATCGTC-T--TCGTCGGCGATAGCAAACGCACGTGTGGATTGGAA 213
Query 180 AGAGACGGAGGAGGCGCACGTGTTCAAGGCGGATCTGCCAGGGATGAAGAAAGAAGAGGT 239
|||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 214 AGAGACGGCGGAGGCGCACGTGTTCAAGGCGGATTTACCGGGGATGAAGAAAGAAGAGGT 273
Query 240 TAAAGTAGAGATAGAGGATGATACTGTGCTTAAGATCAGCGGAGAGAGACACGTTGAGAA 299
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 274 TAAAGTAGAGATTGAGGATGATAGTGTGCTTAAGATCAGCGGAGAGAGACACGTTGAGAA 333
Query 300 AGAGGAGAAGCAGGACACGTGGCATCGTGTAGAGAGATCGAGTGGGGGATTCTCGAGGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 AGAGGAGAAGCAGGACACGTGGCATCGTGTAGAGAGATCGAGTGGGGGATTCTCGAGGAA 393
Query 360 GTTTAGGTTACCGGAGAATGTGAAGATGGATCAAGTTAAGGCTTCTATGGAGAATGGAGT 419
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 394 GTTTAGGTTACCGGAGAATGTGAAGATGGATCAAGTTAAAGCTTCAATGGAGAATGGTGT 453
Query 420 TTTGACTGTGACTGTGCCTAAGGTTGAGACTAA---GAAGAAGGCTCAAGTTAAGTCTAT 476
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 454 TTTGACTGTGACTGTGCCTAAAGTGGAGACTAATAAGAAGAAGGCTCAAGTTAAGTCTAT 513
Query 477 TGAAATCTCTGGCTAAAGCCAATTTAGCTTGAATTG 512
||| |||||||||||| ||||||||||||||| |||
Sbjct 514 TGATATCTCTGGCTAA-GCCAATTTAGCTTGATTTG 548
> AT1G07400.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:2274943-2275758 FORWARD LENGTH=816
Length=816
Score = 586 bits (317), Expect = 7e-167
Identities = 453/516 (88%), Gaps = 20/516 (4%)
Strand=Plus/Plus
Query 1 TTTCGAAATC-ACTCAAAGAAAATGTCGCTAATTCCAAGCTTCTTCGGCAGCAACAGACG 59
|||||||||| | || || ||||||||| ||||||||||||||||||| |||||| ||
Sbjct 187 TTTCGAAATCAAATC---GAGAATGTCGCTTATTCCAAGCTTCTTCGGCAACAACAGGCG 243
Query 60 AATCAACAACAGCATCTTCGATCCATTCTCACTCGACGTTTGGGATCATCCATTCAAGGA 119
| | ||||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct 244 -A--AGCAACAGCATCTTCGACCCGTTCTCACTCGACGTTTGGG---ATCCATTCAAGGA 297
Query 120 TCTTCAATTCCCGTC-T---TCTTC--ATCGTCATCGGCGATAGCGAACGCACGTGTGGA 173
|| ||||||||||| | ||| | | ||||||||||| ||||||||||||||||
Sbjct 298 ACTGCAATTCCCGTCGTCGCTCTCCGGAGAAACATCGGCGATAACGAACGCACGTGTGGA 357
Query 174 CTGGAAAGAGACGGAGGAGGCGCACGTGTTCAAGGCGGATCTGCCAGGGATGAAGAAAGA 233
|||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 358 CTGGAAAGAGACGGCGGAGGCGCACGTGTTCAAGGCCGATCTGCCGGGGATGAAGAAAGA 417
Query 234 AGAGGTTAAAGTAGAGATAGAGGATGATACTGTGCTTAAGATCAGCGGAGAGAGACACGT 293
||||||||||| ||||||||||| || | |||||| |||||||| ||||||||||||||
Sbjct 418 GGAGGTTAAAGTGGAGATAGAGGACGACAGTGTGCTCAAGATCAGTGGAGAGAGACACGT 477
Query 294 TGAGAAAGAGGAGAAGCAGGACACGTGGCATCGTGTAGAGAGATCGAGTGGGGGATTCTC 353
||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||
Sbjct 478 GGAGAAAGAGGAGAAGCAGGACACGTGGCATCGTGTGGAGAGGTCGAGCGGGCAATTCTC 537
Query 354 GAGGAAGTTTAGGTTACCGGAGAATGTGAAGATGGATCAAGTTAAGGCTTCTATGGAGAA 413
||||||||||| | | |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 538 GAGGAAGTTTAAGCTGCCGGAGAATGTGAAGATGGATCAAGTCAAGGCTTCCATGGAGAA 597
Query 414 TGGAGTTTTGACTGTGACTGTGCCTAAGGTTGA-GA--CTAAGAAGAAGGCTCAAGTTAA 470
|||||| |||||||||| |||||||| || || || ||||||||||||||||||||||
Sbjct 598 CGGAGTTCTGACTGTGACGGTGCCTAAAGTGGAAGAGGCTAAGAAGAAGGCTCAAGTTAA 657
Query 471 GTCTATTGAAATCTCTGGCTAAAGCCAATTTAGCTT 506
||||||||| |||||||||||||||||||| |||||
Sbjct 658 GTCTATTGATATCTCTGGCTAAAGCCAATT-AGCTT 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24464029589
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5