BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925171
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58360.1 | Symbols: AAP1, NAT2 | amino acid permease 1 | chr... 2473 0.0
> AT1G58360.1 | Symbols: AAP1, NAT2 | amino acid permease 1 | chr1:21676530-21680502
FORWARD LENGTH=1740
Length=1740
Score = 2473 bits (1339), Expect = 0.0
Identities = 1448/1501 (96%), Gaps = 6/1501 (0%)
Strand=Plus/Plus
Query 3 TCTCTTTCTCTCATCACTATGAAGAGTTTCAACACAGAAGAACACAACCCCTCCACGGCG 62
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 76 TCTCTTTCTCTCATCACTATGAAGAGTTTCAACACAGAAGGACACAACCACTCCACGGCG 135
Query 63 GAATCCGGCGATGCCTACACGGTGTCGGACCCGACAAAGAACGTCGATGAAGACGGTCGA 122
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 136 GAATCCGGCGATGCCTACACCGTGTCGGACCCGACAAAGAACGTCGATGAAGATGGTCGA 195
Query 123 GAGAAGCGTACCGGGACGTGGCTTACGGCGAGTGCGCATATTATCACGGCGGTGATAGGC 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GAGAAGCGTACCGGGACGTGGCTTACGGCGAGTGCGCATATTATCACGGCGGTGATAGGC 255
Query 183 TCCGGAGTGTTGTCTTTAGCATGGGCTATAGCTCAGCTTGGTTGGATCGCAGGGACTA-C 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 256 TCCGGAGTGTTGTCTTTAGCATGGGCTATAGCTCAGCTTGGTTGGATCGCAGGGAC-ATC 314
Query 242 GATTTTGCTCATTTTCTCGTTCATTACTTACTTCACCTCCACCATGCTTGCTGATTGCTA 301
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 315 GATCTTACTCATTTTCTCGTTCATTACTTACTTCACCTCCACCATGCTTGCCGATTGCTA 374
Query 302 CCGTGCGCCGGATCCCGTCACCGGAAAACGGAATTACACTTACATGGACGTTGTTCGATC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CCGTGCGCCGGATCCCGTCACCGGAAAACGGAATTACACTTACATGGACGTTGTTCGATC 434
Query 362 TTACCTCGGTGGTAGGAAAGTGCAGCTCTGTGGAGTGGCACAATATGGGAATCTGATTGG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TTACCTCGGTGGTAGGAAAGTGCAGCTCTGTGGAGTGGCACAATATGGGAATCTGATTGG 494
Query 422 GGTCACTGTTGGTTACACCATCACTGCTTCTATTAGTTTGGTAGCGGTCGGGAAATCGAA 481
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 495 GGTCACTGTTGGTTACACCATCACTGCTTCTATTAGTTTGGTAGCGGTAGGGAAATCGAA 554
Query 482 CTGTTTCCACGATAAAGGGCACGGTGCGGATTGTACTATATCGAATTATCCGTATATGGC 541
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 555 CTGCTTCCACGATAAAGGGCACACTGCGGATTGTACTATATCGAATTATCCGTATATGGC 614
Query 542 GGTTTTTGGGATCATTCAGGTTATTCTAAGCCAGATCCCGAATTTTCACAAGCTCTCTTT 601
||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 615 GGTTTTTGGCATTATTCAGGTTATTCTTAGCCAGATCCCAAATTTCCACAAGCTCTCTTT 674
Query 602 TCTTTCCATTATGGCCGCGGTCATGTCCTTCACTTATGCAACTATTGGAATTGGTCTAGC 661
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 675 TCTTTCCATTATGGCCGCGGTCATGTCCTTTACTTATGCAACTATTGGAATCGGTCTAGC 734
Query 662 CATTGCGACCGTCGCAGGTGGGAAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGG 721
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CATCGCAACCGTCGCAGGTGGGAAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGG 794
Query 722 AGTTGATGTAACCGCAGCTCAGAAGATATGGAGATCGTTTCAAGCGGTTGGGGACATAGC 781
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGTAGATGTAACCGCAGCTCAAAAGATATGGAGATCGTTTCAAGCGGTTGGGGACATAGC 854
Query 782 GTTCGCCTATGCTTACGCCACGGTTCTCATTGAGATTCAGGATACACTGAGATCTAGCCC 841
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 855 GTTCGCCTATGCTTATGCCACGGTTCTCATCGAGATTCAGGATACACTAAGATCTAGCCC 914
Query 842 AGCTGAGAACAAAGCCATGAAAAGAGCAAGTCTTGTTGGAGTATCAACCACCACATTTTT 901
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 915 AGCTGAGAACAAAGCCATGAAAAGAGCAAGTCTTGTGGGAGTATCAACCACCACTTTTTT 974
Query 902 CTACATCTTATGTGGATGCATCGGCTATGCTGCATTTGGAAACAAAGCCCCTGGAGACTT 961
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 975 CTACATCTTATGTGGATGCATCGGCTATGCTGCATTTGGAAACAATGCCCCTGGAGATTT 1034
Query 962 CCTCACGGATTTCGGGTTTTTCGAGCCCTTTTGGCTCATTGACTTTGCAAATGCTTGCAT 1021
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1035 CCTCACAGATTTCGGGTTTTTCGAGCCCTTTTGGCTCATTGACTTTGCAAACGCTTGCAT 1094
Query 1022 TGCTGTCCACCTTATTGGTGCCTATCAGGTGTTCGCGCAGCCGATTTTCCAGTTTGTTGA 1081
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1095 CGCTGTCCACCTTATTGGTGCCTATCAGGTGTTCGCGCAGCCGATATTCCAGTTTGTTGA 1154
Query 1082 GAAAAAATGCAATAGAAACTATCCAGACAACAAGTTCATCACTTCCGAATATCCAGTAAA 1141
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1155 GAAAAAATGCAACAGAAACTATCCAGACAACAAGTTCATCACTTCTGAATATTCAGTAAA 1214
Query 1142 CGTACCTTTCCTTGGAAAATTCAACATTAGCCTCTTCAGATTGGTGTGGAGGTCAGCTTA 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1215 CGTACCTTTCCTTGGAAAATTCAACATTAGCCTCTTCAGATTGGTGTGGAGGACAGCTTA 1274
Query 1202 TGTGGTTATAACCACTGTTGTAGCTATGATATTCCCTTTCTTCAACGCGATCTTGGGTCT 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1275 TGTGGTTATAACCACTGTTGTAGCTATGATATTCCCTTTCTTCAACGCGATCTTAGGTCT 1334
Query 1262 TATCGGAGCAGCTTCCTTCTGGCCTTTAACGGTTTATTTCCCTGTGGAGATGCACATTGC 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TATCGGAGCAGCTTCCTTCTGGCCTTTAACGGTTTATTTCCCTGTGGAGATGCACATTGC 1394
Query 1322 ACAAACCAAGATTAAGAAGTACTCTGCTAGATGGATTGCGCTGAAAATGATGTGCTATGT 1381
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1395 ACAAACCAAGATTAAGAAGTACTCTGCTAGATGGATTGCGCTGAAAACGATGTGCTATGT 1454
Query 1382 TTGCTTGATCGTCTCGCTCTTAGCTGCGGCTGGATCCATCGCGGGACTGATAAGTAGTGT 1441
||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 1455 TTGCTTGATCGTCTCGCTCTTAGCTGCAGCCGGATCCATCGCAGGACTTATAAGTAGTGT 1514
Query 1442 CAAGACATACAAGCCCTTCCGGACTA-GCCATGAATGAGTTTGAGATCCATGA-GAGAGT 1499
||| || ||||||||||||||||||| || |||| |||||||||||||| | | ||||||
Sbjct 1515 CAAAACCTACAAGCCCTTCCGGACTATGC-ATGAGTGAGTTTGAGATCC-TCAAGAGAGT 1572
Query 1500 C 1500
|
Sbjct 1573 C 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5