BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925271
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57790.1 | Symbols: | F-box family protein | chr1:21404408-... 848 0.0
> AT1G57790.1 | Symbols: | F-box family protein | chr1:21404408-21405956
REVERSE LENGTH=1318
Length=1318
Score = 848 bits (459), Expect = 0.0
Identities = 574/629 (91%), Gaps = 9/629 (1%)
Strand=Plus/Plus
Query 125 AAGAGATTATGATCCTGGCCATGTCACTATTCGTACTTGGAGTCCGGGTCAAACGATGTG 184
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 AAG-GATTATGATCCAGGCCATGTCACTATCCGTACTTGGAGTCCGGGTCAAACGATGTG 604
Query 185 GACTTCAATGCAGGTTGAGTCTCAATTCCTTGATGTTGAACATAACAATGTTGTTTTCTC 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 605 GACTTCAATGCAGGTTGAGTCTCAATTCCTTGATGTTGATCATAACAATGTTGTTTTCTC 664
Query 245 AAATGGTGTGTTTTACTGTCTCAATCGAAGAAACCTCGTTGCGGGTTTTGATCCCTCTTT 304
|||||| |||||||||||||| || | |||||||| |||||||| ||||||||| |||||
Sbjct 665 AAATGGCGTGTTTTACTGTCTTAACCAAAGAAACCACGTTGCGGTTTTTGATCCGTCTTT 724
Query 305 AAGTACATGGAATGTGT-TTGATTTACCGCCACCTAGATGTCTCGATGAGAAGAGTTGGA 363
| ||||||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||
Sbjct 725 ACGTACATGGAATGT-TCTTGATGTACCGCCACCTAGATGTCCCGATGATAAGAGTTGGA 783
Query 364 ATCAAGGAAAGTTCATGGT-GGATTATAAAGGAGACATATTTGTGATACATACATGTGAA 422
|| |||||||||||||||| || ||||||||| |||||| ||||||| | ||||| ||||
Sbjct 784 ATGAAGGAAAGTTCATGGTAGG-TTATAAAGGTGACATACTTGTGATTCGTACATATGAA 842
Query 423 AACAAGGATCCTTTGGTGTTTAAACTCGATCTTACTCGAGGTATTTGGGAGCTGAAGGAT 482
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 843 AATAAGGACCCTTTGGTGTTTAAACTCGATCTTACTCGAGGTATTTGGGAGGAGAAGGAT 902
Query 483 ACACTCGGTAGTTTAACTATTTTTGCGAGTAGTAAGTCATGTGAATCCAGAACTTATGTT 542
||||||||||||||||||||||||| |||||| |||||||||||||| ||||| ||||||
Sbjct 903 ACACTCGGTAGTTTAACTATTTTTGTGAGTAGGAAGTCATGTGAATCGAGAACATATGTT 962
Query 543 AACGAGGGGATGTTAAGGAATAGTGTGTACTTTCCTAAGTTGTGTTACAATGAGAAACGT 602
|| || |||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 963 AAGGATGGGATGTTAAGGAATAGTGTATACTTCCCTGAGTTGTGTTACAATGAGAAACAA 1022
Query 603 TGTGTGGCGTATTCGTTTGATGAAGGGAGATACCACCCGCTTGAGCATAATCTTGATTGG 662
|||||| ||||||||||||||||||||| ||||||| || |||||| |||||||||||
Sbjct 1023 AGTGTGGTGTATTCGTTTGATGAAGGGAGGTACCACCTGCGAGAGCATGATCTTGATTGG 1082
Query 663 GGAAACCTGCTTTCTTCTAATAACATTTGGATCGAGCCTCCCAAGAACGCTTTTGAGCTA 722
||||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GGAAAACAGCTTTCATCTGATAACATTTGGATCGAGCCTCCCAAGAACGCTTTTGAGCTA 1142
Query 723 GTTTAAAAGTACATATTTTGGCAATGTTT 751
||||||||||| | ||||| ||||||||
Sbjct 1143 GTTTAAAAGTA--T-TTTTG-CAATGTTT 1167
Score = 156 bits (84), Expect = 3e-37
Identities = 107/117 (91%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 14 ATCTATCATGAGCGTTGAA-AACAATGAAGGGTCGTCCAAGAACATGTGGAAGGATCTTC 72
||| |||||||||| |||| | ||||||| || |||||||||| |||||||||||||||
Sbjct 83 ATCCATCATGAGCG-TGAATACCAATGAA-GG--GTCCAAGAACCTGTGGAAGGATCTTC 138
Query 73 CTTTAGAGCTTCTGAGTTCAGTAATGGCTTATCTTGAAATCAAAGATAACGTAAGAG 129
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 139 CTTTAGAGCTTCTGAGTTCAGTAATGACTTTTCTTGAAATCAAAGATAACGTAAGAG 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36469990722
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5