BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925322 Length=1580 Score E Sequences producing significant alignments: (Bits) Value AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma fa... 2512 0.0 > AT1G64860.1 | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24097953-24100952 FORWARD LENGTH=1965 Length=1965 Score = 2512 bits (1360), Expect = 0.0 Identities = 1513/1586 (95%), Gaps = 13/1586 (1%) Strand=Plus/Plus Query 1 TTGAGTGC--AAGAGTGTTATATGATGGCTACTGCAGCTGTTATAGGACTCAACACTGGG 58 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 227 TTGAGTGCAAAAGAGTGTTATATAATGGCTACTGCAGCTGTTATAGGACTCAACACTGGC 286 Query 59 AAAAGATTGTTGAGTTCATCGTTTTATCACTCAGATGTTACCGAGAAGTTTTTATCTGTA 118 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 287 AAAAGATTGTTGAGTTCATCGTTTTATCACTCAGATGTTACAGAGAAGTTTCTATCTGTA 346 Query 119 AATGATCATTGTTCATCACAGTATCATATTGCTTCAACGAAAAGCGGGATAACTGCGAAA 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 AATGATCATTGTTCATCACAGTATCATATTGCTTCAACGAAAAGCGGGATAACTGCGAAA 406 Query 179 AAGGCGTCATCATCGAACTATAGTCCGAGTTTTCCTTCATCGAATCGTCACACACAATCT 238 |||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 407 AAGGCG------TCGAACTATAGTCCGAGTTTTCCTTCGTCGAATCGTCACACACAATCT 460 Query 239 GCCAAGGCTTTGAAAGAGAGTGTAGATGTTGCTTCTACTGAGAAGCCATGGATACATAAT 298 || || ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 461 GCTAAAGCTTTGAAAGAGAGTGTAGATGTTGCTTCTACTGAGAAGCCATGGCTACCTAAT 520 Query 299 GGAAGTCATAAGGAATTGGAAGAGGAA-GGT-T-ATGATGATGATCTAATTGGTCATTCT 355 |||| | |||||||||||||||| ||| | | | ||||||||||||||||| |||||||| Sbjct 521 GGAACTGATAAGGAATTGGAAGAAGAATGTTATGATGATGATGATCTAATTAGTCATTCT 580 Query 356 GTTGAGGCACTTTTACTGCTACAAAAGTCTATGTTGGAGAAAAGTTGGAATCTTTCGTTT 415 ||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||| ||| Sbjct 581 GTTGAGGCAATTTTACTGTTACAGAAGTCTATGTTAGAGAAAAGTTGGAATCTTTCATTT 640 Query 416 GAGAAGGCGGCGTCAAGTGAGTCCT-CGAGCAAGAGGACTATCCGGAAGAAGAAGATTCC 474 || ||||||| ||| ||||||| | || ||||| ||||||| ||||||||||||||||| Sbjct 641 GAAAAGGCGGTGTCGAGTGAGT-ATCCGGGCAAGGGGACTATACGGAAGAAGAAGATTCC 699 Query 475 GGTCATCACCTGTTCAGGGATTTCAGCTAGGCAAAGGAGGATTGGTGCTAAGAAGAAAAC 534 ||| |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| Sbjct 700 GGTTATCACCTGTTCAGGGATTTCAGCTCGTCAAAGAAGGATTGGTGCTAAGAAGAAAAC 759 Query 535 TAATATGACTCATGTTAAAGCAGTTTCAGATGTTTCTAGTGGAAAGCAAGTCAGAGGTTA 594 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 760 TAATATGACTCATGTTAAAGCAGTTTCTGATGTTTCTAGTGGAAAGCAAGTTAGAGGTTA 819 Query 595 TGTGAAGGGTGTAATAAGTGAAGATGTGCTTAGTCACGCGGAAGTTGTGCGCTTGTCCAA 654 |||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || Sbjct 820 TGTGAAAGGTGTAATAAGTGAAGATGTGCTTAGTCATGTGGAAGTTGTGCGCTTGTCTAA 879 Query 655 GAAAATCAAATCTGGTCTTCGTCTTGATGATCATAAGTCAAGATTGAAGGATAGATTAGG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 880 GAAAATCAAATCTGGTCTTCGTCTTGATGATCATAAGTCAAGATTGAAGGATAGATTAGG 939 Query 715 CTGTGAGCCTTCTGATGAACAGCTTGCAGTATCCTTGAAGATATCTCGGGCCGAGCTTCA 774 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 940 CTGTGAGCCTTCTGATGAACAGCTTGCAGTATCTTTGAAGATATCTCGGGCCGAGCTTCA 999 Query 775 GGCGTGGTTGATGGAATGTCATCTAGCTAGAGAGAAGTTGGCTATGAGCAATGTGCGTTT 834 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1000 GGCGTGGTTGATGGAGTGTCATCTAGCTAGAGAGAAGTTGGCTATGAGTAATGTGCGTTT 1059 Query 835 GGTTATGTCTATTGCTCAGCGATACGATAATTTGGGAGCAGAAATGTCTGATCTTGTTCA 894 ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| Sbjct 1060 GGTTATGTCTATTGCTCAGCGTTATGATAATTTGGGAGCAGAAATGTCTGACCTTGTTCA 1119 Query 895 GGGTGGTCTTATCGGACTTTTGCGGGGAATAGAGAAATTTGATTCTTCCAAAGGTTTCAG 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1120 GGGTGGTCTTATCGGACTTTTGCGGGGAATAGAGAAATTTGATTCTTCCAAAGGTTTCAG 1179 Query 955 AATTTCAACTTATGTATATTGGTGGATTCGACAGGGTGTCTCAAGAGCATTAGTGGACAA 1014 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1180 AATTTCAACTTATGTATATTGGTGGATTCGACAGGGTGTCTCAAGAGCACTAGTGGACAA 1239 Query 1015 CTCAAGAACCTTGAGGTTACCTACTCACCTACATGAAAGACTCGGTCTAATCCGAAATGC 1074 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1240 CTCAAGAACCTTGAGGTTACCTACTCACCTACATGAAAGACTCGGTTTAATCCGAAATGC 1299 Query 1075 AAAGCTTAGACTTCAGGAGAAAGGAATCACACCCTCTATTGATAGGATTGCAGAGTCTCT 1134 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1300 AAAGCTTAGACTTCAAGAGAAAGGAATCACACCCTCCATTGATAGGATTGCAGAGTCTCT 1359 Query 1135 AAACATGTCGCAGAAGAAAGTTAGAAATGCAACAGAGGCTGTTAGCAAAATATTTTCTCT 1194 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1360 AAACATGTCGCAGAAGAAAGTTAGAAATGCAACAGAGGCTGTAAGCAAAGTATTTTCTCT 1419 Query 1195 AGACAGAGATGCATTTCCTTCTTTGAACGGTCTCCCTGGAGAAACTCATCACAGTTACAT 1254 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1420 AGACAGAGATGCATTTCCTTCTTTGAATGGTCTCCCTGGAGAAACTCATCACAGTTACAT 1479 Query 1255 TGCGGATAATCGTTTGGAGAACAATCCCTGGCACGGGTATGATGATCTGGCACTTAAGGA 1314 |||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||| Sbjct 1480 TGCGGATACTCGTTTGGAGAACAATCCGTGGCACGGGTATGATGATTTGGCACTCAAGGA 1539 Query 1315 GGAAGTAAGCAAGCTTATAAGTGCAACACTCGGAGAACGGGAAAGGGAGATCATACGATT 1374 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1540 GGAAGTAAGCAAGCTTATAAGTGCAACACTCGGAGAACGGGAAAAAGAGATCATTCGATT 1599 Query 1375 ATACTATGGTCTAGACAAAGAATGTCTCACATGGGAAGACATTAGCAAACGGATAGGATT 1434 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1600 ATACTATGGTCTAGACAAAGAATGTCTCACATGGGAAGACATTAGTAAACGGATAGGATT 1659 Query 1435 ATCGAGAGAGAGGGTAAGACAGGTAGGGCTTGTGGCACTGGAGAAACTAAAACACGCAGC 1494 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1660 ATCGAGAGAGAGGGTGAGACAGGTAGGGCTTGTGGCACTGGAGAAACTAAAACACGCAGC 1719 Query 1495 GAGGAAGAGAAAAATGGAAGCAATGATCCTCAAGAATTGATTTTGTTTTTGTACATTTTG 1554 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1720 GAGGAAGAGAAAAATGGAGGCAATGATCCTTAAGAATTGATTTTGTTTTTGTACATTTTG 1779 Query 1555 ATTACATCAGAGCCATAGAGAGCGGT 1580 |||||||||||||||||||||||||| Sbjct 1780 ATTACATCAGAGCCATAGAGAGCGGT 1805 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78011646930 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5