BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925420
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally... 1724 0.0
> AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally
active 4 | chr1:24236258-24240705 FORWARD LENGTH=1341
Length=1341
Score = 1724 bits (933), Expect = 0.0
Identities = 999/1029 (97%), Gaps = 11/1029 (1%)
Strand=Plus/Plus
Query 11 CGCCATTGAAATGGCTCTCAAAGCTTCACCAGTTGCCGGATTATTCCCTCCTCTCCGTCC 70
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 62 CGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCTCCGTCC 121
Query 71 TACTGCTTCTTCTTCTCCTTCGA---CTTCTAATCGCCCTTGTTCCCTCAGGGTTCTACC 127
||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 122 TACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGATTCT-CC 180
Query 128 C-CTCAGACCATCCTTCTTCGGTAACTCCAGTGGAGCGCTGAGAGTGAATGTGCTT-AGA 185
| |||||| |||| |||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 181 CTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTG-TTGAGA 239
Query 186 TTAGCTTGTGCA-AATAGACTCAGGTGCAATGGTCATGGTGCTACAATGAATCTTTTTGA 244
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TTAGCTTGTG-ATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTTTGA 298
Query 245 ACGATTTTCTAGAGTGGTCAAGTCATATGCCAATGCGCTCATAAGCTCTTTTGAAGACCC 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 299 ACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGACCC 358
Query 305 GGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCGTCA 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCGTCA 418
Query 365 AGCCACTGCACAGGTTTTAGCATCACAAAAGCAGTTGCAGAACAAATATAAAGCGGCACA 424
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 419 AGCCACTGCACAGGTTTTAGCATCACAAAAGCAGTTACAGAACAAATATAAAGCTGCACA 478
Query 425 GCAGTCTTCTGATGATTGGTACAAAAGGGCACAACTTGCTCTTGCAAAAGGAGATGAGGA 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 GCAGTCTTCTGATGATTGGTACAAAAGAGCACAACTTGCTCTTGCAAAAGGAGATGAGGA 538
Query 485 TCTTGCACGTGAGGCCCTTAAACGACGAAAGTCTTTTGCTGACAACGCAAGTGCTCTGAA 544
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 539 TCTTGCACGTGAGGCCCTTAAACGACGAAAGTCTTTTGCTGACAACGCTACTGCTTTGAA 598
Query 545 AACTCAACTAGATCAGCAAAAAGGTGTTGTCGACAATCTTGTTTCAAATACAAGGCTCTT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AACTCAACTAGATCAGCAAAAAGGTGTTGTCGACAATCTTGTTTCAAATACAAGGCTCTT 658
Query 605 GGAGAGTAAGATACAAGAGGCAAAAGCAAAGAAAGATACGCTCCTTGCACGTGCTCGCAC 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAGAGTAAGATACAAGAGGCAAAAGCAAAGAAAGATACGCTCCTTGCACGTGCTCGCAC 718
Query 665 TGCTAAGACTGCAACCAAAGTGCAAGAGATGATAGGGACAGTAAATACAAGCGGTGCTCT 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGCTAAGACTGCAACCAAAGTGCAAGAGATGATAGGGACAGTAAATACAAGCGGTGCTCT 778
Query 725 TTCAGCTTTTGAGAAAATGGAGGAGAAAGTGATGGCTATGGAGTCTGAAGCAGATGCACT 784
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 TTCAGCTTTTGAGAAAATGGAGGAGAAAGTTATGGCTATGGAGTCTGAAGCAGATGCACT 838
Query 785 AACTCAGATTGGAACCGATGAACTCGAGGGGAAGTTTCAAATGCTTGAAACTTCATCTGT 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AACTCAGATTGGAACCGATGAACTCGAGGGGAAGTTTCAAATGCTTGAAACTTCATCTGT 898
Query 845 GGATGATGATCTTGC-GAACTTGAAGAAAGAATTGTCCGGAAGCTCAAAGAAAGGAGAGC 903
||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 GGATGATGATCTTGCAGA-CTTGAAGAAAGAATTGTCTGGAAGCTCAAAGAAAGGAGAGC 957
Query 904 TTCCTCCAGGGAGAAGCACCGTTGCAGCAAGCACGAGATACCCTTTCAAAGACTCAGAGA 963
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTCCTCCAGGGAGAAGCACTGTTGCAGCAAGCACGAGATACCCTTTCAAAGACTCAGAGA 1017
Query 964 TCGAGAATGAGTTAAACGAACTGCGAAGGAAAGCTAACGACTTTTAGATATCGGCTGTTT 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCGAGAATGAGTTAAACGAACTGCGAAGGAAAGCTAACGACTTTTAGATATCGGCTGTTT 1077
Query 1024 CCGAGTTGT 1032
|||| ||||
Sbjct 1078 CCGAATTGT 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5