BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925426
Length=353
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29650.1 | Symbols: ANTR1, PHT4;1 | phosphate transporter 4;... 418 2e-116
> AT2G29650.1 | Symbols: ANTR1, PHT4;1 | phosphate transporter
4;1 | chr2:12673383-12676049 REVERSE LENGTH=1887
Length=1887
Score = 418 bits (226), Expect = 2e-116
Identities = 259/275 (94%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 35 GATAGCTAGTGGAATATGGGCAAACACTGTAGG-GGGCAAAAGGGTTCTTGGATTCGGTG 93
||||||| ||||||| |||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 514 GATAGCTGGTGGAATTTGGGCAGACACTGTAGGAGGG-AAAAGGGTTCTTGGATTCGGTG 572
Query 94 TTATCTGGTGGTCAATCGCCACAATTCTCACTCCTGTAGATGCTAAACTCGGTCTTCCAT 153
|||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 573 TTATTTGGTGGTCAATCGCTACAATTCTCACTCCTGTAGCTGCTAAACTCGGTCTTCCTT 632
Query 154 ACTTGCTTGTTGTTCGTGCTTTCATGGGAGTTGGAGAGGGTGTTGCAATGCCTTCTATGA 213
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 633 ACTTGCTCGTTGTTCGTGCTTTCATGGGAGTTGGAGAGGGTGTTGCAATGCCTGCTATGA 692
Query 214 ACAATATATTGTCGAAGAGGGTGCATGTGCAAGAGAGAAGCAGATCACTCACGCTTGTTT 273
| ||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||
Sbjct 693 ATAATATATTGTCGAAGTGGGTTCCTGTGCAAGAGAGAAGCAGATCACTCGCGCTTGTTT 752
Query 274 ACAGCGGAATGTACCTTGGATCTGTCACCGGTTTA 308
|||||||||||||||||||||||||||||||||||
Sbjct 753 ACAGCGGAATGTACCTTGGATCTGTCACCGGTTTA 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16538089421
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5