BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925455 Length=455 Score E Sequences producing significant alignments: (Bits) Value ATCG00660.1 | Symbols: RPL20 | ribosomal protein L20 | chrC:685... 638 0.0 > ATCG00660.1 | Symbols: RPL20 | ribosomal protein L20 | chrC:68512-68865 REVERSE LENGTH=354 Length=354 Score = 638 bits (345), Expect = 0.0 Identities = 351/354 (99%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 23 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 60 Query 83 GCATCAAGCTTTCGAGGGGCTCATTCACGACTTACACGAACTATGACTCAACAGAGAATA 142 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 GCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATA 120 Query 143 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 180 Query 203 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATCAA 262 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 181 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAA 240 Query 263 TTCATACACAATCTGTACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 322 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 300 Query 323 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATaaaaaaaTAA 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA 354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21665399819 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5