BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925482 Length=791 Score E Sequences producing significant alignments: (Bits) Value AT3G20362.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 174 1e-42 ATCG00250.1 | Symbols: TRNE | this chloroplast gene encodes a U... 135 5e-31 ATCG00240.1 | Symbols: TRNY | tRNA-Tyr | chrC:30323-30406 REVER... 73.1 4e-12 AT3G20365.1 | Symbols: | pre-tRNA | chr3:7104309-7104392 FORWA... 73.1 4e-12 > AT3G20362.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7103817-7104250 FORWARD LENGTH=144 Length=144 Score = 174 bits (94), Expect = 1e-42 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 598 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 TATGATGGCGGTTGAGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTC 107 Query 658 AAGGAGGCAGCGGGGATTCGACTTCCCCTGGGGGTAG 694 ||||||||||| ||||||||||||||||||||||||| Sbjct 108 AAGGAGGCAGCAGGGATTCGACTTCCCCTGGGGGTAG 144 > ATCG00250.1 | Symbols: TRNE | this chloroplast gene encodes a UUC tRNA whose expression is regulated by SIG2. | chrC:30466-30538 REVERSE LENGTH=73 Length=73 Score = 135 bits (73), Expect = 5e-31 Identities = 73/73 (100%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 621 GCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACT 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATTCGACT 60 Query 681 TCCCCTGGGGGTA 693 ||||||||||||| Sbjct 61 TCCCCTGGGGGTA 73 > ATCG00240.1 | Symbols: TRNY | tRNA-Tyr | chrC:30323-30406 REVERSE LENGTH=84 Length=84 Score = 73.1 bits (39), Expect = 4e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 753 GGGTCGATGCCCGAGCGGTTAATGGGGACGGACTGTAAA 791 ||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGTCGATGCCCGAGCGGTTAATGGGGACGGACTGTAAA 39 > AT3G20365.1 | Symbols: | pre-tRNA | chr3:7104309-7104392 FORWARD LENGTH=84 Length=84 Score = 73.1 bits (39), Expect = 4e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 753 GGGTCGATGCCCGAGCGGTTAATGGGGACGGACTGTAAA 791 ||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGTCGATGCCCGAGCGGTTAATGGGGACGGACTGTAAA 39 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38479356602 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5