BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925496
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00040.1 | Symbols: MATK | maturase K | chrC:2056-3636 REVER... 2782 0.0
AT1G34680.1 | Symbols: | pseudogene, ribosomal maturase, blast... 178 2e-43
ATCG00030.1 | Symbols: TRNK, TRNK-UUU, TRNA LYS | Lysine tRNA |... 65.8 2e-09
> ATCG00040.1 | Symbols: MATK | maturase K | chrC:2056-3636 REVERSE
LENGTH=1581
Length=1581
Score = 2782 bits (1506), Expect = 0.0
Identities = 1556/1581 (98%), Gaps = 0/1581 (0%)
Strand=Plus/Plus
Query 22 ATGTGTCATTTCAGAACTCAAGAAAATAAAGACTTTACCTTCAGTTCAAATCGAATTTCA 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTCATTTCAGAACTCAAGAAAATAAAGACTTTACCTTCAGTTCAAATCGAATTTCA 60
Query 82 ATCCAAATGGAGAAATTTCAAGGATATTTAGAGTTCGATGGGGCTCGGCAACAGAGTTTT 141
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCCAAATGGATAAATTTCAAGGATATTTAGAGTTCGATGGGGCTCGGCAACAGAGTTTT 120
Query 142 CTATATCCACttttttttCGGGAGTATATTTATGTACTTGCTTATGATCATGGTTTAAAT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCTTATGATCATGGTTTAAAT 180
Query 202 AGATTAAATAGAAATCGCTCTATTTTCTTGGAAAATACGGATTATGACAAAAAATATAGT 261
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 181 AGATTAAATAGAAATCGCTATATTTTCTTGGAAAATGCGGATTATGACAAAAAATATAGT 240
Query 262 TCACTAATTGTGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTCCC 321
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCACTAATTACGAAACGCTTAATTTTGCGAATGTATGAACAGAATCGTTTGATTATTCCC 300
Query 322 ACTAAGGATTTGAACCAAAATTCCTTTTTGGGGCATACCAGTCTTTTCTATTATCAAATG 381
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTAAGGATGTGAACCAAAATTCCTTTTTGGGGCATACCAGTCTTTTCTATTATCAAATG 360
Query 382 ATATCTGTTTTATTTGCAGTGATTGTCGAAATTCCATTTTCCCTAAGATTAGGATCCTCT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATATCTGTTTTATTTGCAGTGATTGTCGAAATTCCATTTTCCCTAAGATTAGGATCCTCT 420
Query 442 TTTCAAGGAAAACAATTaaaaaaaTCTTATAATTTACAATCAATTCATTCAATATTTCCC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTCAAGGAAAACAATTAAAAAAATCTTATAATTTACAATCAATTCATTCAATATTTCCC 480
Query 502 TTTTTAGAAGACAAATTAGCACATTTTAATTATGTGTTAGATGTACTAATACCTTACCCC 561
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTTAGAAGACAAATTAGGACATTTTAATTATGTGTTAGATGTACTAATACCTTACCCC 540
Query 562 ATCCATCTAGAAATCTTGGTTCAAATCCTACGTTACTGGGTAAAAGATGCCTCTTCTTTG 621
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 541 ATCCATCTAGAAATCTTGGTTCAAACCCTACGTTACCGGGTAAAAGATGCCTCTTCTTTG 600
Query 622 CAtttttttCGGTTCTGTTTATACGAGTATTGCAATTGTAAGAATTTTTATATTaaaaaa 681
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 601 CATTTTTTTCGGTTCTGTTTATACGAGTATTGTAATTGGAAGAATTTTTATATTAAAAAA 660
Query 682 aaaTCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAATAC 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAATCAATTTTGAATCCAAGATTTTTCTTGTTCTTATATAATTCTCATGTATGTGAATAC 720
Query 742 GAATCCATCtttttttttCTACGCAAGCGGTCTTCGCATTTACGATCGCCATCTTATGAA 801
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 GAATCCATCTTTTTTTTTCTACGCAAGCGGTCTTCGCATTTACGATCGACATCTTATGAA 780
Query 802 GTCCTTTTTGAGCGAAtttttttCTATGGAAAAATACAACATTTTTTCAAAGTTTTTATT 861
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||
Sbjct 781 GTCCTTTTTGAGCGAATTGTATTCTATGGAAAAATACACCATTTTTTCAAAGTTTTTGTT 840
Query 862 AATAATTTTCCGGCGATCCTAGGGTTGCTCAAGGATCCTTTCATACATTATGTTAGATAT 921
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AATAATTTTCCGGCAATCCTAGGGTTGCTCAAGGATCCTTTCATACATTATGTTAGATAT 900
Query 922 CACGGAAGATGCATTCTGGCAACAAAGGATACGCCGCTTCTGATGAATAAATGGAAATAt 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACGGAAGATGCATTCTGGCAACAAAGGATACGCCGCTTCTGATGAATAAATGGAAATAT 960
Query 982 ttttttGTTAATTTATGGCAATGTTATTTTTCCGTATGGTTTCAATCGCAAAAGGTCAAT 1041
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 TATTTTGTTAATTTATGGCAATGTTATTTTTCGGTATGGTTTCAATCGCAAAAGGTCAAT 1020
Query 1042 ATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCAAGTTTGCGATTA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATAAATCAATTATCTAAAGATAATTTAGAGTTTCTGGGTTATCTGTCAAGTTTGCGATTA 1080
Query 1102 AACCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCATTTCTAATAGATAATGTTAGA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AACCCTTTAGTGGTACGTAGTCAAATGCTAGAAAACTCATTTCTAATAGATAATGTTAGA 1140
Query 1162 ATCAAATTGGATAGCAAAATTCCAATTTCTTCTATTATTGGATCATTGGCTAAAGATAAA 1221
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1141 ATCAAATTGGATAGCAAAATTCCAATTTCTTCTATTATTGGATCGTTGGCTAAAGATAAA 1200
Query 1222 TTTTGTAATGTATTAGGGCATCCCATTAGTAAAGCGACCTGGACGGATTCATCAGATTCT 1281
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1201 TTTTGTAATGTATTAGGGCATCCCATTAGTAAAGCAACCTGGACGGATTCATCAGATTCT 1260
Query 1282 GATATTCTCAACCGATTTGTGCGGATATGCAGAAATATTTCTCATTATTACAGCGGATCT 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GATATTCTCAACCGATTTGTGCGGATATGCAGAAATATTTCTCATTATTACAGCGGATCT 1320
Query 1342 TCaaaaaaaaaaaaTTTGTATCGAATAAAATATATACTTCGTCTTTGTTGTGTTAAAACT 1401
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCAAAAAAAAAGAATTTGTATCGAATAAAATATATACTTCGTCTTTGTTGTGTTAAAACT 1380
Query 1402 TTGGCTCGTAAACACAAAAGTACTGTACGCGCTTTTTTAAAAAGGTTGGGCTCGGGTTTA 1461
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1381 TTGGCTCGTAAACACAAAAGTACTGTACGCACTTTTTTAAAAAGGTTGGGCTCTGGTTTA 1440
Query 1462 TTGGAAGAATTCCTTACGGGGGAAGACCAAGTTCTTTCTTTAATCTTCCCAAGAAGTTAT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TTGGAAGAATTCCTTACGGGGGAAGACCAAGTTCTTTCTTTAATCTTCCCAAGAAGTTAT 1500
Query 1522 TATGCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTCTTTATCTTAAT 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TATGCTTCTAAAAGATTATATCGAGTGCGAATTTGGTATTTGGATATTCTTTATCTTAAT 1560
Query 1582 GATTTAGTCAATCATGAATAA 1602
||||| |||||||||||||||
Sbjct 1561 GATTTGGTCAATCATGAATAA 1581
> AT1G34680.1 | Symbols: | pseudogene, ribosomal maturase, blastp
match of 66% identity and 1.8e-18 P-value to GP|12002339|gb|AAG43301.1|AF144332_1|AF144332
maturase K {Arabis lyallii}
| chr1:12711181-12711455 FORWARD LENGTH=275
Length=275
Score = 178 bits (96), Expect = 2e-43
Identities = 126/140 (90%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 485 TTCATTCAATATTTCCCTTTTTAGAAGACAAATTAGCACATTTTAATTATGTGTTAGATG 544
||||||| ||||||||| |||||||||||||| ||||||||||||||| || |||||||
Sbjct 2 TTCATTCGATATTTCCC-CTTTAGAAGACAAATAAGCACATTTTAATTACGTTTTAGATG 60
Query 545 TACTAATACCTTACCCCATCCATCTAGAAATCTTGGTTCAAATCCT-ACGTTACTGGGTA 603
||||| |||||||||||||||||||||||||||||||||||| ||| | |||| |||||
Sbjct 61 TACTAGTACCTTACCCCATCCATCTAGAAATCTTGGTTCAAA-CCTTATATTACCGGGTA 119
Query 604 AAAGATGCCTCTTCTTTGCA 623
||| |||||||| |||||||
Sbjct 120 AAAAATGCCTCT-CTTTGCA 138
Score = 122 bits (66), Expect = 9e-27
Identities = 98/113 (87%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 651 TTGCAA-TTGTAAGAATTTTTATATTaaaaaaaaaTCAATTTTGAATCCAAGATTTTTCT 709
|||||| | | |||||||||| |||| |||| |||||| | ||||||||||||||||||
Sbjct 134 TTGCAACTAG-AAGAATTTTTCTATTTTAAAATAATCAA-TATGAATCCAAGATTTTTCT 191
Query 710 TGTTCTTATATAATTCTCATGTATGTGAATACGAATCCATCt-ttttttttCT 761
||||||||||||||| |||||| | ||||||| |||||||| ||||||||||
Sbjct 192 TGTTCTTATATAATTTTCATGTGTATGAATACTAATCCATCCATTTTTTTTCT 244
> ATCG00030.1 | Symbols: TRNK, TRNK-UUU, TRNA LYS | Lysine tRNA
| chrC:1717-4347 REVERSE LENGTH=72
Length=72
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1907 CCGACTAGTTCCGGGTTCGAGTCCCGGGCAACCCA 1941
|||||||||||||||||||||||||||||||||||
Sbjct 38 CCGACTAGTTCCGGGTTCGAGTCCCGGGCAACCCA 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96636049125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5