BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925505
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | c... 2634 0.0
ATCG00470.1 | Symbols: ATPE | ATP synthase epsilon chain | chrC... 614 1e-174
AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family prot... 124 2e-27
AT1G55100.1 | Symbols: | transposable element gene | chr1:2055... 124 2e-27
> ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta |
chrC:52660-54156 REVERSE LENGTH=1497
Length=1497
Score = 2634 bits (1426), Expect = 0.0
Identities = 1462/1480 (99%), Gaps = 0/1480 (0%)
Strand=Plus/Plus
Query 21 ATGAGAACAAATCCTACTACTTCGGATCCAGAGGTTTCGATACGTGaaaaaaaaaaCCTG 80
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAACAAATCCTACTACTTCAAATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTG 60
Query 81 GGACGTATCGCTCAAATCATTGGTCCGGTACTGGATGTAGCCTTTCCCCCGGGCAAAATG 140
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGACGTATCGCCCAAATCATTGGTCCGGTACTGGATGTAGCCTTCCCCCCGGGCAAAATG 120
Query 141 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180
Query 201 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGATGTAGCTATGAGT 260
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240
Query 261 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300
Query 321 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360
Query 381 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420
Query 441 CAATTAGATACAAAATTATCAATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 500
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATTAGATACAAAATTATCGATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480
Query 501 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540
Query 561 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600
Query 621 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660
Query 681 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTCTATGGTCAGATGAAT 740
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTTTATGGTCAGATGAAT 720
Query 741 GAACCACCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 800
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAACCGCCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780
Query 801 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 840
Query 861 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900
Query 921 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACAAAAAAGGGGTCC 980
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACGAAAAAGGGGTCC 960
Query 981 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCTCCTGCC 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCACCTGCC 1020
Query 1041 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080
Query 1101 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140
Query 1161 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAGCAAACTTTACAACGTTACAAGGAG 1220
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAACAAACTTTACAACGTTACAAGGAG 1200
Query 1221 CTTCAGGACATTATAGCTATCCTGGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACC 1280
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGATGAATTATCCGAAGAGGATCGCTTAACC 1260
Query 1281 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320
Query 1341 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAAATTG 1400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAATTTG 1380
Query 1401 ATCCTTTCCGGAGAATTTGATTCTCTTCCTGAACAGGCCTTTTACTTAGTGGGTAACATC 1460
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCCGAACAGGCCTTTTACTTAGTGGGTAACATC 1440
Query 1461 GACGAAGCTACTGTGAAGGCTACAAACTTAGAAATGGAGA 1500
|| |||||||||| ||||||||| ||||||||||||||||
Sbjct 1441 GATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGA 1480
> ATCG00470.1 | Symbols: ATPE | ATP synthase epsilon chain | chrC:52265-52663
REVERSE LENGTH=399
Length=399
Score = 614 bits (332), Expect = 1e-174
Identities = 342/347 (99%), Gaps = 0/347 (0%)
Strand=Plus/Plus
Query 1501 AAGTAAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTACCGAACCACG 1560
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 53 AAGTAAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTAGCAAACCACG 112
Query 1561 CGCTGATTGCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTACTAACCAATGGT 1620
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 113 CGCCGATTGCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTGCTAACCAATGGT 172
Query 1621 TAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATAACTATTTTAG 1680
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 173 TAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAG 232
Query 1681 TAAATGATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TAAATGATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAA 292
Query 1741 TAGCAGAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TAGCAGAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAG 352
Query 1801 CTCTCAGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTGA 1847
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CTCTCAGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTGA 399
> AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family protein
| chr1:20554352-20558529 FORWARD LENGTH=2762
Length=2762
Score = 124 bits (67), Expect = 2e-27
Identities = 111/130 (85%), Gaps = 12/130 (9%)
Strand=Plus/Minus
Query 817 AAGACGTACTTCT--ATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGT 874
||||||||||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 2588 AAGACGTACTTCTACAGTCATAGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA--T 2531
Query 875 ATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGA 934
| ||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 2530 -T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAGA 2479
Query 935 AATGGGTACT 944
||||||||||
Sbjct 2478 AATGGGTACT 2469
> AT1G55100.1 | Symbols: | transposable element gene | chr1:20558235-20559103
REVERSE LENGTH=869
Length=869
Score = 124 bits (67), Expect = 2e-27
Identities = 111/130 (85%), Gaps = 12/130 (9%)
Strand=Plus/Plus
Query 817 AAGACGTACTTCT--ATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGT 874
||||||||||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 749 AAGACGTACTTCTACAGTCATAGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA--T 806
Query 875 ATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGA 934
| ||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 807 -T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAGA 858
Query 935 AATGGGTACT 944
||||||||||
Sbjct 859 AATGGGTACT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92419203345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5