BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925508
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00430.1 | Symbols: PSBG | photosystem II reaction center pr... 1214 0.0
> ATCG00430.1 | Symbols: PSBG | photosystem II reaction center
protein G | chrC:49257-49934 REVERSE LENGTH=678
Length=678
Score = 1214 bits (657), Expect = 0.0
Identities = 671/678 (99%), Gaps = 0/678 (0%)
Strand=Plus/Plus
Query 23 ATGAATTCCATTAAGTTTCCCGTACTTGATCGAACAACaaaaaaaTCCGTTATTTCAACT 82
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAATTCCATTAAGTTTCCCATACTTGATCGAACAACAAAAAATTCCGTTATTTCAACT 60
Query 83 ACGTTAAATGATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGT 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGTTAAATGATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGT 120
Query 143 ACCAGTTGTTGTTTCATTGAATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGT 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAGTTGTTGTTTCATTGAATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGT 180
Query 203 TATGGGTTAGTACCAAGATCGAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACA 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGGGTTAGTACCAAGATCGAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACA 240
Query 263 GTAACAATGAAAATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCAAAG 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GTAACAATGAAAATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAACCGAAG 300
Query 323 TATGTTATTGCTATGGGAGCGTGTACAATTACgggggggATGTTCAGTACCGATTCTTAT 382
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TATGTTATTGCTATGGGAGCCTGTACAATTACAGGGGGGATGTTCAGTACCGATTCTTAT 360
Query 383 AGTACTGTTCGAGGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTACTGTTCGAGGAGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA 420
Query 443 CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAA 480
Query 503 ATCTATAAGGATCGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTATAAGGATCGAATTAGACCTCAACAGGGTAATCGGTGTTTTACTACCAATCACAAG 540
Query 563 TTTTTTGTTGTACGCAGTCCGCATATTGGAAATTATGATCAAGAATTACTCTATCCACCA 622
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTTTTTGTTGTACGCAGTCCGCATATTGGAAATTATGATCAAGAACTACTCTATCCACCA 600
Query 623 TCATCTACTTCAGAGATCTCTACTGAAAAATTTTTTAAATACAAAAGTCCAGTATCGTCC 682
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 601 TCATCTACTTCAGAGATCTCTACTGAAACATTTTTTAAATACAAAAGTCCAGTATCGTCC 660
Query 683 CACGAATTAGTGAATTAG 700
||||||||||||||||||
Sbjct 661 CACGAATTAGTGAATTAG 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5