BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925539 Length=519 Score E Sequences producing significant alignments: (Bits) Value ATCG00420.1 | Symbols: NDHJ | NADH dehydrogenase subunit J | ch... 870 0.0 AT4G13285.1 | Symbols: | Pseudogene of ATCG00420 | chr4:773868... 198 4e-50 > ATCG00420.1 | Symbols: NDHJ | NADH dehydrogenase subunit J | chrC:48677-49153 REVERSE LENGTH=477 Length=477 Score = 870 bits (471), Expect = 0.0 Identities = 475/477 (99%), Gaps = 0/477 (0%) Strand=Plus/Plus Query 21 ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC 60 Query 81 TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT 120 Query 141 GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA 180 Query 201 CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA 240 Query 261 GCGGAAGAAGTCTGCATAAAAGTATTTACTCACATGAGTAATCCTAGAATTCCATCCGTT 320 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 241 GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT 300 Query 321 TTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATC 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATC 360 Query 381 ACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAAAGTTGGATAGGGTGG 440 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 ACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAGGGTGG 420 Query 441 CCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA 497 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA 477 > AT4G13285.1 | Symbols: | Pseudogene of ATCG00420 | chr4:7738680-7738867 FORWARD LENGTH=188 Length=188 Score = 198 bits (107), Expect = 4e-50 Identities = 150/170 (88%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 116 GCCCGAAGATTGGCATTCTATTGCTGTAATTTTATATGTATATGGTTACAATTATTTACG 175 ||||||| ||| |||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 17 GCCCGAAAATTAGCATTCTATTGCTGTAATTTTATATGTATATGATTATAAATATTTACG 76 Query 176 TTCGCAATGTGCCTATGATGTGGCACCA-GGT-GGCCTCTTAGCCAG--CGTGTATCATC 231 ||||||||||| |||||||||||||| | ||| || |||||||||| ||||||||||| Sbjct 77 TTCGCAATGTGTCTATGATGTGGCAC-ATGGTTGGTCTCTTAGCCAAAACGTGTATCATC 135 Query 232 TTACGAGAATAGAATATGGTGTTAATCAAGCGGAAGAAGTCTGCATAAAA 281 |||||||||||| || | |||||||||||| | ||||||| | ||||||| Sbjct 136 TTACGAGAATAGTATGTAGTGTTAATCAAGTGAAAGAAGTTTCCATAAAA 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24815668618 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5