BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925609
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65430.1 | Symbols: ARI8, ATARI8 | IBR domain-containing pro... 2861 0.0
> AT1G65430.1 | Symbols: ARI8, ATARI8 | IBR domain-containing protein
| chr1:24300898-24306236 REVERSE LENGTH=2048
Length=2048
Score = 2861 bits (1549), Expect = 0.0
Identities = 1681/1746 (96%), Gaps = 3/1746 (0%)
Strand=Plus/Plus
Query 1 TCGAGAAGaaaaaaaTCTCAATGGATGCTGATGACGATTTCTACAGCGGCACCGAAAACT 60
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 58 TCGAGAAGAAGAGAATCTCAATGGAAGCTGATGACGATTTCTACAGCGGCACCGAAAACT 117
Query 61 ACTCCGATTACGCCGACTCCGACGAAGATGACGCCGACGCCGATTACGAGTTCGTTGAAG 120
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 118 ACTCCGATTACGCCGACTCCGACGAAGATGACGCCGACGGCGAGTACGAGTTCGTTGACG 177
Query 121 ACGCCGCTGATGATTCCGATGACCTTATCTTCCGCCGCCGCCAGCAAAATTATAGTGTGT 180
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 ACGCTGCTGATGATTCCGATGACCTTATCTTCCGTCGCCGCCAGCAAAATTATAGTGTGT 237
Query 181 TAAGCGAGGCAGATATTTGTAAGCTTCAAGAAGACGATATTTCAAGGATTTCTACTGTTT 240
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 TAAGCGAAGCAGATATTTGTAAGCTTCAAGAAGATGATATTTCAAGGATTTCTACTGTTT 297
Query 241 TGTCCATTTCGAGGAATTCTTCTGCGATCCTGCTTCGTCACTACAATTGGTGTGTGAGCA 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGTCCATTTCGAGGAATTCATCTGCGATCCTGCTTCGTCACTACAATTGGTGTGTGAGCA 357
Query 301 GAGTTCATGATGAATGGTTTGCTGATGAGGAAAAGGTTCGAGATGCTGTTGGCTTGTTGG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 358 GAGTTCATGATGAATGGTTTGCTGATGAGGAAAAGGTTCGAGATGCTGTTGGTTTATTAG 417
Query 361 AGAAACCTGTTGTTGATTTCCCAACTGATGGAGAACTTGAATGTGGAATTTGTTTTGAGG 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 AGAAACCTGTTGTTGATTTCCCAACTGATGGAGAACTTGATTGTGGAATTTGTTTTGAGA 477
Query 421 CTTTCCTTTGTGACAAATTGCATGCTGCTGCTTGTGGTCACCCGTTTTGCGATTCATGCT 480
||||||||| |||||||||||||||||||||||||||||| || || ||||| ||||| |
Sbjct 478 CTTTCCTTTCTGACAAATTGCATGCTGCTGCTTGTGGTCATCCATTCTGCGACTCATGTT 537
Query 481 GGGAAGGTTATATCACCACCGCGATTAATGATGGTCCAGGGTGTCTTACGTTACGATGTC 540
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 GGGAAGGTTATATCACCACAGCGATTAATGATGGTCCAGGGTGTCTTACATTACGATGTC 597
Query 541 CAGATCCTTCTTGCAGAGCTGCTGTTGGTCAGGATATGATCAATTTGCTAGCTCCTGATA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGATCCTTCTTGCAGAGCTGCTGTTGGTCAGGATATGATCAATTTGCTAGCTCCTGATA 657
Query 601 AAGAT-AGCCAGAAGTACACTAGTTATTTTGTCAGATCATACGTCGAAGACAATAGAAAG 659
||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 AAGATAAG-CAAAAGTACACTAGTTATTTTGTCAGATCATACGTTGAAGACAATAGAAAG 716
Query 660 ACCAAGTGGTGTCCCGCTCCTGGCTGTGACTACGCTGTAAACTTTGTTGTTGGGAGTGGT 719
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 717 ACCAAGTGGTGTCCCGCTCCTGGCTGTGACTATGCTGTAAATTTTGTTGTTGGAAGTGGT 776
Query 720 AATTATGATGTGAATTGTCGCTGTTGTTACAGTTTCTGCTGGAATTGTGCTGAAGAAGCT 779
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 777 AATTATGATGTGAATTGTCGCTGCTGTTACAGTTTCTGCTGGAATTGTGCTGAAGAAGCT 836
Query 780 CACCGTCCTGTAGATTGTGACACTGTTTCTAAGTGGGTGTTGAAGAATAGCGCTGAGTCT 839
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 837 CACCGTCCTGTAGATTGTGACACTGTTTCTAAGTGGGTATTGAAGAATAGTGCTGAGTCG 896
Query 840 GAGAATATGAATTGGATTTTGGCCAATTCCAAGCCCTGTCCAAAATGCAAACGGCCAATA 899
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 GAGAATATGAATTGGATTTTGGCAAATTCCAAGCCCTGTCCAAAATGCAAACGGCCAATA 956
Query 900 GAGAAAAACCAGGGTTGTATGCATATAACGTGCACCCCGCCATGTAAATTTGAATTCTGC 959
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 957 GAGAAAAACCAGGGTTGTATGCATATTACGTGCACCCCACCATGTAAATTTGAGTTCTGC 1016
Query 960 TGGCTTTGCCTTGGAGCGTGGACAGAGCATGGTGAGAAGACAGGTGGCTTTTATGCTTGT 1019
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGCTTTGCCTTGGGGCGTGGACAGAGCATGGTGAGAAGACAGGTGGCTTTTATGCTTGT 1076
Query 1020 AACCGTTATGAAGCAGCGAAGCAAGATGGCATTTATGATGAGACTGAAAAACGCCGAGAG 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AACCGTTATGAAGCAGCAAAGCAAGATGGCATTTATGATGAGACTGAAAAACGCCGAGAG 1136
Query 1080 ATGGCAAAGAACTCTCTTGAGAGATATACCCACTACTATGAAAGATGGGCGACCAATCAA 1139
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1137 ATGGCAAAGAACTCTCTTGAGAGATATACCCACTACTATGAGAGATGGGCAACCAATCAA 1196
Query 1140 TCGTCTAGGCAAAAGGCGCTGGTGGATCTTGAGAAGATGCAAACAGATGATATTGAGAAG 1199
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1197 TCGTCTAGGCAAAAGGCGCTGCTGGATCTTAAGAAGATGCAAACAGATGATATTGAGAAG 1256
Query 1200 CTCAGTGACATACAGTGTCAGCCTGAATCACAACTGAAGTTCATTATAGAAGCATGGTTA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CTCAGTGACATACAGTGTCAGCCTGAATCACAACTGAAGTTCATTATAGAAGCATGGTTA 1316
Query 1260 CAGATAGTCGAATGCAGACGAGTTCTAAAATGGACATATGCCTATGGTTTTTACATACCT 1319
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAGATAGTTGAATGCAGACGAGTTCTAAAATGGACATATGCCTATGGTTTTTACATACCT 1376
Query 1320 GACCACGAGCACGGAAAAAGAGTGTTTTTTGAGTACTTACAAGGTGAAGCTGAGTCGGGC 1379
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1377 GACCAGGAGCATGGAAAAAGAGTGTTTTTTGAGTACTTGCAAGGCGAAGCTGAGTCGGGC 1436
Query 1380 CTTGAACGGCTTCATCAATGTGCTGAAAAAGAGCTGCAACCATACATAGATGCCAAAGAT 1439
|||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1437 CTTGAACGACTTCATCAATGTGCTGAAAAAGAGCTGCTACCATACTTAGATGCCAAAGGT 1496
Query 1440 CCAAGTGAAGATTTTAATGAGTTCCGCACAAAACTGGCAGGTTTAACAAGTGTTACCAAA 1499
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CCAAGTGAAGATTTTAATGAATTCCGCACAAAACTGGCAGGTTTAACAAGTGTTACCAAA 1556
Query 1500 AACTATTTTGAGAACTTGGTTCGAGCACTGGAGAATGGGCTATCGGATGTGAGCTCGCAT 1559
||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 1557 AACTATTTTGAGAACTTGGTTAGAGCGCTGGAGAATGGGCTATCGGATGTGAACTCGCAT 1616
Query 1560 GATGCATATGATCGAACCTCAAGTTCAAAGAGCTTAGGTGGGAAGACTAAGGGATCGACT 1619
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1617 GATGCATATGATCGAACTTCAAGTTCAAAGAGCTTAGGGGGGAAGACTAAGGGATCGAGT 1676
Query 1620 TCTAAAGCCAGCAGCTCCGATTCAAGCCATTGGTCTTGTGAATATTGCACTTATGTAAAT 1679
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1677 TCTAAAGCCAGCAGCTCCGATTCAAGCCATTGGCCTTGTGAATATTGCACTTACGTAAAT 1736
Query 1680 CCAAGGTCGACCACCATTTGCCAAATGTGTGAACATGGCCGGTGAAATGTCAGCAAACTG 1739
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1737 CCAAGGTCGACCACCATTTGCCAAATGTGTGAACATGGCCGGTGAAATGCCAG-AAACTG 1795
Query 1740 GCATTA 1745
||||||
Sbjct 1796 GCATTA 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86294736855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5