BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925737 Length=1530 Score E Sequences producing significant alignments: (Bits) Value AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:... 2460 0.0 AT5G17330.1 | Symbols: GAD, GAD1 | glutamate decarboxylase | ch... 869 0.0 > AT1G65960.2 | Symbols: GAD2 | glutamate decarboxylase 2 | chr1:24552003-24557730 FORWARD LENGTH=2053 Length=2053 Score = 2460 bits (1332), Expect = 0.0 Identities = 1467/1533 (96%), Gaps = 6/1533 (0%) Strand=Plus/Plus Query 1 TCTCTCTCACTAAAAAGAAACAAAGATGGTTTTGACAAAAACCGCAACGAATGATGAATC 60 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 TCTCTTTCACTAAACAGAAACAAAGATGGTTTTGACAAAAACCGCAACGAATGATGAATC 126 Query 61 TGTCAGCACCATGTTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTATGAGATTGG 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TGTCTGCACCATGTTCGGATCTCGCTATGTTCGCACTACACTTCCCAAGTATGAGATTGG 186 Query 121 TGAGAATTCGATACCGAAAGACGCTGCCTATCAGATCATAAAAGATGAGCTGATGCTTGA 180 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 187 TGAGAATTCGATACCGAAAGACGCTGCGTATCAGATCATAAAAGATGAGCTGATGCTTGA 246 Query 181 TGGTAACCCGAGGCTTAACCTAGCTTCGTTTGTGACTACATGGATGGAACCAGAGTGTGA 240 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 247 TGGTAACCCAAGGCTTAACCTAGCTTCTTTTGTGACTACATGGATGGAACCAGAGTGTGA 306 Query 241 CAAACTCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCAC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 CAAACTCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCAC 366 Query 301 AACTGAGTTTCAGAACCGATGTGTAAACATTATAGCTCGACTGTTCAATGCGCCACTCAA 360 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 367 AACTGAGCTCCAGAACCGATGTGTAAACATTATAGCTCGACTGTTCAATGCGCCACTCGA 426 Query 361 GGAATCTGAGACTGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGC 420 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 GGAATCTGAGACGGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGC 486 Query 421 CGGATTGGCCTTCAAAAGAAAATGGCAAAACAGACGCAAGGCTGAGGGTAAACCCTATGA 480 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 487 CGGATTGGCCTTCAAAAGAAAATGGCAGAACAAACGCAAGGCTGAGGGTAAACCCTATGA 546 Query 481 CAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTGGGAGAAATTCGCTCGGTA 540 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 547 CAAACCCAACATTGTCACCGGAGCCAATGTTCAAGTTTGCTGGGAGAAATTCGCTCGGTA 606 Query 541 CTTCGAGGTGGAGCTAAAAGAGGTAAAGCTAAGTGAAGGTTACTACGTGATGGATCCAGA 600 |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 607 CTTCGAGGTGGAGCTAAAGGAAGTAAACCTAAGTGAAGGTTACTACGTGATGGATCCAGA 666 Query 601 CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCGGCCATTCTTGGG-TCCA 659 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| Sbjct 667 CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCAGCCATA-TTGGGATCCA 725 Query 660 CACTCAATGGTGAGTTCGAAGACGTGAAGCGTCTCAATGACTTGCTGGTCAAGAAAAATG 719 ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 726 CACTCAACGGTGAGTTCGAAGACGTGAAACGTCTCAATGACTTGCTAGTCAAGAAAAACG 785 Query 720 AGGAGACTGGTTGGAACACACCGATCCACGTAGATGCAGCAAGTGGAGGGTTCATAGCTC 779 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 786 AGGAGACTGGTTGGAACACACCGATCCACGTGGATGCAGCAAGTGGAGGGTTCATAGCTC 845 Query 780 CATTTATCTATCCTGAATTGGAATGGGACTTTAGACTTCCTTTGGTTAAGAGCATCAACG 839 | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 846 CGTTTATCTATCCTGAATTAGAATGGGACTTTAGGCTTCCTTTGGTTAAGAGCATCAACG 905 Query 840 TGAGTGGTCACAAGTATGGACTTGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAT 899 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 906 TGAGTGGTCACAAGTATGGACTAGTCTATGCTGGTATTGGTTGGGTCGTGTGGAGGGCAG 965 Query 900 CAGAGGATTTGCCTGAAGAGCTTATCTTTCATATTAACTATCTTGGTTCTGATCAACCCA 959 |||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 966 CAGAGGATTTACCTGAAGAGCTTATCTTTCATATTAATTATCTTGGTGCTGATCAACCCA 1025 Query 960 CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTATCAACTCA 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1026 CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTACCAGCTCA 1085 Query 1020 TTCGTCTTGGGTTCGAGGGGTACAAGAATGTGATGGAGAATTGCATAGAGAACATGGTGG 1079 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1086 TTCGTCTTGGATTCGAGGGGTACAAAAATGTGATGGAGAATTGCATAGAGAACATGGTGG 1145 Query 1080 TTCTCAAAGAAGGGATAGAGAAAACAGAGCGTTTCAACATAGTTTCCAAGGACCAAGGAG 1139 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1146 TTCTCAAAGAAGGTATAGAGAAAACAGAGCGTTTCAACATAGTCTCAAAGGACCAAGGAG 1205 Query 1140 TGCCAGTCGTAGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTG 1199 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 TGCCAGTCGTCGCCTTCTCTCTCAAGGACCATAGTTTCCACAACGAGTTCGAGATCTCTG 1265 Query 1200 AGATGCTACGCCGTTTTGGATGGATCGTCCCGGCTTACACTATGCCTGCGGATGCGCAAC 1259 |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || | Sbjct 1266 AGATGCTACGTCGTTTTGGCTGGATCGTCCCAGCTTACACTATGCCTGCCGATGCACAGC 1325 Query 1260 ACATCACGGTTCTACGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAAAGAC 1319 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1326 ACATCACGGTTCTGCGTGTTGTCATCAGGGAAGATTTCTCAAGAACACTCGCGGAGAGAC 1385 Query 1320 TTGTAG-TCGATATTGT-GAAGGTGCTTCACGAGCTAGATACCTTGCCTTCCAAGATATC 1377 |||| | | |||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1386 TTGTTGCT-GATATT-TCGAAGGTGCTTCATGAGCTAGATACCTTGCCTTCCAAGATATC 1443 Query 1378 TAAGAAGATGGGAATAGAAGGGATCGCAGAAAATGTTAAGGATAAGAAAATGGAGAGGGA 1437 ||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||| Sbjct 1444 TAAGAAGATGGGAATAGAAGGGATCGCGGAAAATGTAAAGGAGAAGAAGATGGAGAAGGA 1503 Query 1438 GGCTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGATAGGAAGAAGATGAA 1497 | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1504 GATTCTGATGGAAGTTATTGTTGGATGGAGGAAGTTTGTGAAGGAGAGGAAGAAGATGAA 1563 Query 1498 TGGTGTGTGCTAAGGAAGTGTGTTGTGTTTGTG 1530 |||||||||||||| |||||||||| |||||| Sbjct 1564 TGGTGTGTGCTAAGCAAGTGTGTTGCCTTTGTG 1596 > AT5G17330.1 | Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711012-5715075 FORWARD LENGTH=1874 Length=1874 Score = 869 bits (470), Expect = 0.0 Identities = 1009/1266 (80%), Gaps = 50/1266 (4%) Strand=Plus/Plus Query 128 TCGATACCGAAAGACGCTGCCTATCAGATCATAAAAGATGAGCTGATGCTTGATGGTAAC 187 ||||| || || || || || ||||||||||| || || |||||||||||||| || || Sbjct 235 TCGATTCCTAAGGAAGCGGCGTATCAGATCATCAACGACGAGCTGATGCTTGACGGGAAT 294 Query 188 CCGA-GGCTT-AACCTAGCTTCGTTTGTGACTACATGGATGGAACCAGAGTGTGACAAAC 245 || | || || ||| |||| || |||||||| ||||||||||| || |||||||| |||| Sbjct 295 CC-ACGG-TTGAACTTAGCCTCCTTTGTGACGACATGGATGGAGCCTGAGTGTGATAAAC 352 Query 246 TCATCATGGACTCTATCAATAAGAACTACGTTGATATGGATGAGTACCCTGTCACAACTG 305 |||||||| ||| ||||| |||||||| ||||| ||||| |||||||| ||||| || | Sbjct 353 TCATCATGTCCTCCATCAACAAGAACTATGTTGACATGGACGAGTACCCCGTCACCACCG 412 Query 306 AGTTTCAGAACCGATGTGTAAACATTATAGCTCGA-CTGTTCAATGCGCCACTCA-AGGA 363 | |||||||||||||||| ||||| || || | | || |||||||| || | | | || Sbjct 413 AACTTCAGAACCGATGTGTGAACATGATTGCAC-ATCTATTCAATGCACC-GTTAGAAGA 470 Query 364 ATCTGAGACTGCGGTGGGAGTAGGGACAGTTGGTTCTTCAGAAGCCATCATGTTAGCCGG 423 | ||||| || || |||||||| || ||||| || || || ||||| ||||| ||||| Sbjct 471 GGCGGAGACCGCCGTCGGAGTAGGAACCGTTGGATCATCGGAGGCCATAATGTTGGCCGG 530 Query 424 ATTGGCCTTCAAAAGAAAATGGCAAAAC-AGACGCAAGGCTGAGGGTAAACCCTAT-GAC 481 ||||||||||| | |||||||| ||| || ||||| ||||| || |||||| | || Sbjct 531 TTTGGCCTTCAAGCGTAAATGGCAGAACAAG-CGCAAAGCTGAAGGCAAACCC-GTCGAT 588 Query 482 AAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGCTGGGAGAAATTCGCTCGGTAC 541 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 589 AAACCCAACATTGTCACCGGAGCCAATGTTCAAGTGTGTTGGGAGAAATTCGCTAGGTAC 648 Query 542 TTCGAGGTGGAGCTAAAAGAGGT-AAAGCTAAGTGAAGGTTACTACGTGATGGATCCAGA 600 || ||||| || || || || || ||| | |||||||| ||||| |||||||| || | Sbjct 649 TTTGAGGTTGAACTTAAGGAAGTGAAAT-TGAGTGAAGGATACTATGTGATGGACCCTCA 707 Query 601 -CAAAGCAGCAGAAATGGTAGACGAGAACACAATCTGTGTCGCGGCCATTCTTGGGTCCA 659 ||| || | || ||||| || |||||||| || ||||| |||||||||||||| |||| Sbjct 708 ACAA-GCTGTTGATATGGTTGATGAGAACACCATTTGTGTTGCGGCCATTCTTGGTTCCA 766 Query 660 CACTCAATGGTGAGTTCGAAGACGTGAAGCGTCTC-AATGA-CTTGCT-GGTCAAGAAA- 715 | || ||||| || |||||||| || || | ||| || || || || |||| | ||| Sbjct 767 CTCTTAATGGAGAATTCGAAGATGTTAAAC-TCTTGAACGATCT--CTTGGTCGA-AAAG 822 Query 716 AATGAGGAGACTGGTTGGAACACACCGATCCACGTAGATGCAGCAAGTGGAGGGTTCATA 775 || | || || || ||| | ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 823 AACAAAGAAACCGGATGGGATACACCAATCCACGTGGATGCGGCAAGTGGAGGATTCATT 882 Query 776 GCTCCATTTATCTATCCTGAATTGGAATGGGACTTTAGACTTCCTTTGGTTAAGAGCATC 835 || || ||| | ||||| |||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 883 GCACCGTTTTTGTATCCGGAATTGGAATGGGACTTTAGACTTCCCTTGGTGAAGAGTATC 942 Query 836 AACGTGAGTGGTCACAAGTATGGACTTGTCTATGCTGGTATTGGTTGGGTCG-TGTGGAG 894 || |||||||||||||||||||||||||| || || || ||||||||||| | | ||||| Sbjct 943 AATGTGAGTGGTCACAAGTATGGACTTGTGTACGCAGGGATTGGTTGGGT-GATCTGGAG 1001 Query 895 GG-CATCAGAGGATTTGCCTGAAGAGCTTATCTTTCATATTAACTATCTTGGTTCTGATC 953 || ||||||||||||||| || || ||||| ||||| || ||||||||| |||| | Sbjct 1002 AAACAA-AGAGGATTTGCCTGAGGAACTCATCTTCCATATCAATTATCTTGGTGCTGACC 1060 Query 954 AACCCAC-TTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATACTAT 1012 ||||||| ||| ||||||||||||||||| || || || ||| | |||||||||||||| Sbjct 1061 AACCCACCTTT-ACTCTCAATTTCTCCAAAGGTTCAAGTCAAGTCATTGCTCAATACTAC 1119 Query 1013 CAACTCATTCGTCTTGGGTT-CGAGGGGTACAAGAA-TGTGATGGAGAATTGCATAGAGA 1070 ||||| || || ||||| |||||| |||| ||| ||||||||||||||||| ||||| Sbjct 1120 CAACTTATCCGA-TTGGGCCACGAGGGTTACA-GAAATGTGATGGAGAATTGCAGAGAGA 1177 Query 1071 ACATGGTGGTTCTCAAAG-AAGGGA-TAGAGAAAACAGAGCGTTTCAACATAGTTTCCAA 1128 | ||| | || || || | |||| | | ||||| ||||| | |||||||| || || || Sbjct 1178 ATATGATCGTCCT-AAGGGAAGG-ACTTGAGAAGACAGAAAGGTTCAACATCGTCTCAAA 1235 Query 1129 GGACCAAGGAGTGCCAGTCGTAGCCTTCTCTCTC-AAGGACCAT-AGTT-TCCACAAC-G 1184 |||| | ||||||||| | || || ||||| || || || | || | || ||| | | Sbjct 1236 GGACGAGGGAGTGCCACTTGTCGCTTTCTC-CTTGAAAGAT-AGCAGCTGTC-ACA-CTG 1291 Query 1185 AGTTCGAGATCTCTGAGATGCTACGCCGTTTTGGATGGATCGTCCCGGCTTACACTATGC 1244 ||||||| ||||| || ||||| ||| | | ||||||||| || ||||| ||||| |||| Sbjct 1292 AGTTCGAAATCTCCGACATGCTTCGCAGGTATGGATGGATAGTGCCGGCCTACACAATGC 1351 Query 1245 CTGCGGATGCGCAACACATCACGGTTCTACGTGTTGTCATCAGGGAAGATTTCTCAAGAA 1304 || | |||| ||||||||||| ||||| ||||| || ||||| ||||||||||| |||| Sbjct 1352 CTCCAAATGCACAACACATCACTGTTCTTCGTGTGGTTATCAGAGAAGATTTCTCGAGAA 1411 Query 1305 CACTCGCGGAAAGACTTGT-AGTCGATATTGTGAAGGTGCTTCACGAGCTAGAT-ACCTT 1362 ||||||| || |||||||| | ||||||| | ||| ||| | | ||||| ||| | ||| Sbjct 1412 CACTCGCTGAGAGACTTGTGA-TCGATATAGAGAAAGTGATGCGTGAGCTCGATGAGCTT 1470 Query 1363 GCCTTC 1368 ||||| Sbjct 1471 -CCTTC 1475 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75501619680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5